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Easysep human b cell isolation kit

Manufactured by STEMCELL
Sourced in Canada

The EasySep Human B Cell Isolation Kit is a laboratory product designed to isolate human B cells from a variety of sample types. It utilizes a magnetic bead-based separation method to quickly and efficiently purify B cells without the need for column-based techniques.

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42 protocols using easysep human b cell isolation kit

1

Single-cell RNA-seq of Isolated B Cells

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B cells were isolated from frozen-thawed PBMCs using the EasySep Human B cell Isolation Kit (STEMCELL Technologies) on a RoboSep platform. Cells were encapsulated in droplets using the Chromium Controller (10x Genomics). Reverse transcription and cDNA amplification were performed using the Chromium Single Cell 3′ Kit (10x Genomics). All steps were done according to the manufacturer’s instructions. One hundred nanograms of cDNA (25% of generated cDNA) was used as input for library preparation. Libraries were sequenced using the Illumina HiSeq 3000 platform eight lanes of sequencing at 26 bp–8 bp–98 bp according to 10x Genomics sequencing recommendations.
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2

Isolation of CD19+ B Cells from PBMCs

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To validate specificity of BTK antibodies CD19+ B cells were isolated from PBMCs of healthy donors. PBMCs were isolated from blood which was anticoagulated with citrat by using Leukosep-Tubes (Greiner bio one, Kremsmünster, Austria) and the separating medium Biocoll (Merck/Biochrom, Berlin, Germany). CD19+ B cells were isolated from human PBMCs by negative selection using the EasySep™ Human B Cell Isolation Kit (Stemcell, Vancouver, Canada) according to manufacturer’s instructions.
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3

Bulk BCR Sequencing from B Cell Subsets

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Sorted GC B cells and LNPCs from FNA, enriched BMPCs from bone marrow or enriched MBCs from PBMCs from blood were used for library preparation for bulk BCR sequecning. Circulating MBCs were magnetically isolated by first staining with IgD-PE and MojoSort anti-PE Nanobeads (BioLegend), and then processing with the EasySep Human B Cell Isolation Kit (StemCell Technologies) to negatively enrich IgDlo B cells. RNA was prepared from each sample using the RNeasy Plus Micro kit (Qiagen). Libraries were prepared using the NEBNext Immune Sequencing Kit for Human (New England Biolabs) according to the manufacturer’s instructions without modifications. High-throughput 2×300-bp paired-end sequencing was performed on the Illumina MiSeq platform with a 30% PhiX spike-in according to manufacturer’s recommendations, except for performing 325 cycles for read 1 and 275 cycles for read 2.
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4

Stimulation of Human B-lymphocytes

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Human PBMC were obtained by density gradient centrifugation and human B-cells were negatively sorted from PBMC using EasySep Human B-cell Isolation Kit (StemCell) according to the manufacturer’s instructions. Purified B-lymphocytes were seeded at 1 × 106 cells/ml in IMDM medium (Lonza) supplemented with 20% fetal bovine serum (Deutscher), 1% penicillin/streptomycin (Gibco) and stimulated for 4 days with 100 ng/ml human recombinant CD40L (Enzo Life Sciences) alone or with 50 ng/ml recombinant human IL-4 (Peprotech) or 2 μg/ml Gardiquimod (InvivoGen) or 2.5 μg/ml CpG oligodeoxynucleotide 2006 (InvivoGen) or 100 ng/ml IL-21 (R&D Systems) or 100ng/ml INFγ (R&D Systems) or 50 ng/ml Pam3CSK4 (InvivoGen) or 0.5 μg/ml goat anti-human kappa (Southern Biotech).
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5

B-NHL Cell Line and Normal B-Cell Isolation

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The study was approved in accordance with the University of Hawaii Institutional Review Board. B-NHL cell lines (Ramos and CA46) were obtained from American Type Culture Collection (ATCC, Manassa, VA) and cultured with RPMI 1640 medium and fetal calf serum. The cells were washed and re-suspended in 0.9% saline solution. Normal B-cells were isolated from peripheral blood using a negative selection Robosep kit (EasySep Human B-Cell Isolation Kit, Stemcell Technologies, Cambridge, MA) and re-suspended in saline solution as noted above.
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6

ATP Modulates B Cell CD27 Expression

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Peripheral blood mononuclear cells from nine healthy donors were cultivated in RPMI‐1640 without phenol red and supplemented with 1% Penicillin‐Streptomycin and 20 mm Hepes (all from Gibco), followed by incubation with ATP (Invitrogen, 6.7 mm), ATP and suramin (Sigma, St. Louis, MO, USA, 50 μm), ATP and MMP‐8 inhibitor (Merck, 10 µM, Darmstadt, Germany) or control medium for 60 min at 37°C 5% CO2. Subsequently, cells were analysed by flow cytometry on a ZE5 Cell Analyzer (Bio‐Rad) for changes in surface expression and analysed as previously described with PCR for CD27 mRNA and supernatants were analysed for remaining ATP levels, and by ELISA for quantity of CD27. For assessing the capacity of B cells to break down ATP, B cells were isolated using EasySep Human B Cell Isolation Kit (StemCell Technologies, Vancouver, Canada), then cultivated and stimulated as described above. ATP concentrations in supernatants at multiple timepoints were measured, and CD27 expression on cells was assessed by flow cytometry.
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7

B-NHL Cell Line and Normal B-Cell Isolation

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The study was approved in accordance with the University of Hawaii Institutional Review Board. B-NHL cell lines (Ramos and CA46) were obtained from American Type Culture Collection (ATCC, Manassa, VA) and cultured with RPMI 1640 medium and fetal calf serum. The cells were washed and re-suspended in 0.9% saline solution. Normal B-cells were isolated from peripheral blood using a negative selection Robosep kit (EasySep Human B-Cell Isolation Kit, Stemcell Technologies, Cambridge, MA) and re-suspended in saline solution as noted above.
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8

B-Cell Isolation and Immortalization

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B cell isolation was performed using the the EasySep Human B Cell Isolation Kit (StemCell Technologies). PBMCs were diluted in PBS supplemented with 2% FBS and 1 mM EDTA to a final concentration of 107 cells/ml. Isolated B cells were resuspended in B-LCL-medium containing CpG ODN 2006 (2.5 μg/ml; InvivoGen) and holo-transferrin (30 μg/ml; Sigma-Aldrich). Previously quantified Epstein Barr virus–containing supernatant from B-95 cells was added to the cell suspension before plating 5 × 105 cells per well in a round-bottom 96-well plate.
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9

Expansion of Primary Human B Cells

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B cells were isolated from PBMCs by immunomagnetic negative selection using EasySep Human B Cell Isolation Kit (Stemcell Technologies) in accordance with the manufacturer’s instructions. B cells were cultured in StemMACS HCS Expansion Media XF (Miltenyi Biotec) supplemented with 1% streptomycin and penicillin (Invitrogen), 5% Human AB Serum (Valley Biomedical), and 125 IU/mL of IL4 (Miltenyi Biotec) at a density of 5 × 105 cells/ml. B cells were expanded by crosslinking CD40 using Human CD40-Ligand Multimer Kit (Miltenyi Biotec) at a concentration of 8 U/ml in accordance with the manufacturer’s instructions. Media, IL4, and multimeric CD40L were refreshed every 3–4 days throughout the duration of all experiments.
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10

Isolating B Cells from Cryopreserved PBMCs

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PBMC samples were thawed in a 37°C water bath, and cells were immediately and gently added to pre-chilled thaw diluent (1:30 ratio) containing Plasma-Lyte A Injection, pH 7.4 (Baxter Healthcare Corp) with added heparin (10 IU/mL, StemCell Tech) and DNase I (0.01 mg/mL, Stem Cell Tech). Cells were centrifuged at 300x g for 5 min at room temperature and pellet resuspended in 1X RoboSep buffer (StemCell Tech) for subsequent B cell isolation. If cell aggregates were observed, cell suspensions were filtered with a 37 μm cell strainer (StemCell Tech). B cell isolation was performed using the EasySep Human B cell Isolation kit (StemCell Tech) with minor adjustments to the standard protocol, including performing isolation in a 96-well plate with proportionately scaled-down reagents. B cell purity was assessed via flow cytometry for select samples. Cells were stained with: CD19 PE (BD; clone HIB19), CD14 FITC (BD; clone M5E2), CD15 BV510 (BD; clone W6D3), CD3 BV421 (BD; clone SK7), CD56 PE-Cy7 (BD; clone B159), CD45 APC-Cy7 (BD; clone 2D1), and 7-AAD (BioLegend). Samples were acquired on a CytoFlex analyzer (Beckman Coulter), and data were analyzed using FlowJo v10 (FlowJo, LLC).
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