The largest database of trusted experimental protocols

50 protocols using bacmam 2

1

Fluorescent Organelle Labeling in PDAC cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
PDAC053T cells were seeded at 200000 cells per well 24 h prior to the experiment in 1 μL of medium. Cells were then transduced with CellLight Lysosomes-GFP, BacMam 2.0 (Thermo Fisher Scientific, C10596), CellLight ER-GFP, BacMam 2.0 (Thermo Fisher Scientific, C10590), CellLight Mitochondria-GFP, BacMam 2.0 (Thermo Fisher Scientific, C10600) according to the manufacturer’s procedure. In brief, 70 μL of BacMam reagent was added to the medium and mixed. Cells were incubated for 16 h.
+ Open protocol
+ Expand
2

Visualizing Cellular Organelles with Fluorescent Probes

Check if the same lab product or an alternative is used in the 5 most similar protocols
To visualize cells’ organelles commercially available kits were applied. Tubulin was stained with a red fluorescent protein, using CellLight® Tubulin‐RFP, BacMam 2.0 (Life Technologies), Golgi apparatus was labelled with a green fluorescent protein, using CellLight® Golgi‐GFP, BacMam 2.0 (Life Technologies), and endoplasmic reticulum was stained with a red fluorescent protein using CellFight® ER‐RFP, BacMam 2.0 (Life Technologies) following manufacturers’ instructions. Briefly, cells were incubated overnight in the CO2 incubator, 37°C. Next cells were washed three times with HBSS, fixed in 4% PFA for 40 min. and washed again. Cells nuclei were counterstained with DAPI.
+ Open protocol
+ Expand
3

Imaging Cell Organelle Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell organelles were stained with commercially available kits. Tubulin was stained with a red fluorescent protein, using CellLight Tubulin-RFP, BacMam 2.0 (Life Technologies); Golgi apparatus was labeled with a green fluorescent protein, using CellLight Golgi-GFP, BacMam 2.0 (Life Technologies); and endoplasmic reticulum was stained with a red fluorescent protein using CellLight ER-RFP, BacMam 2.0 (Life Technologies). The differences in fluorescence intensities were measured using ImageJ software. All procedures were performed in accordance with the manufacturer's protocols. Briefly, CellLight reagent was added to the cells in complete culture medium (1 : 80) and mixed gently. Cells were then returned to the culture incubator for 24 hours. After that cells were observed under an inverted epifluorescent microscope using the appropriate filter sets.
+ Open protocol
+ Expand
4

Mitochondrial Fusion Dynamics Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
The stable cell lines were transfected with mitochondria-GFP, BacMam 2.0 (mitoGFP) or mitochondria-RFP, BacMam 2.0 (mitoRFP) (ThermoFisher), mixed, and co-cultured overnight on glass coverslips. Cycloheximide (20 μg/mL, Sigma) was added in DMEM without serum 30 min before cell fusion. PEG-mediated cell fusion was performed by treatment with pre-warmed PEG 1500 (Sigma) solution for 90s and washed three times with DMEM containing 10% serum for 10 min per wash, followed by incubation in DMEM containing 10% serum and Cycloheximide for 3h. The cells on glass coverslips were fixed and analyzed by confocal microscopy.
+ Open protocol
+ Expand
5

Visualizing Organelle Dynamics in Living Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
β-Nicotinamide adenine dinucleotide sodium salt (Sigma Aldrich, N0632–1G), cyclic ADP ribose (Sigma Aldrich, C7344–5MG), Dantrolene sodium salt (Tocris, 0507), CellLight Mitochondria-GFP, BacMam 2.0 (Thermo Fisher Scientific, C10600), CellLight Golgi-RFP, BacMam 2.0 (Thermo Fisher Scientific, C10593), ER-Tracker Blue-White DPX (Thermo Fisher Scientific, E12353), Dantrolene (Tocris, 507). DPA/Terbium for membrane fusion assay kit (Biotium, 80104), 2,6-Pyridinedecarboxilic acid (Sigma Aldrich, P63808), Carmustine (Millipore Sigma, C0400).
+ Open protocol
+ Expand
6

Synthesis and Characterization of Functional Polymers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Acrylic acid (AA, 99%, anhydrous, Sigma-Aldrich), acetonitrile (ACN, 99.8%, Sigma-Aldrich), 4-methoxyphenol (MEHQ, 99%, Sigma-Aldrich), diethyl ether (DEE, >98%, Sigma-Aldrich), ethanol (>99.8%, Sigma-Aldrich), 1,4-dioxane (>99%, Sigma-Aldrich), Luperox® TBH70X tertbutyl hydroperoxide solution (tBuOOH, 70% wt.% in H2O, Sigma-Aldrich), L-ascorbic acid (AsAc, Sigma Aldrich), 2-methoxyethylamine (MeOEtNH2, 99%, Sigmal-Aldrich), poly(ethylene glycol) methyl ether acrylate (Sigma-Aldrich), 4-(4,6-Dimethoxy-1,3,5-triazin-2-yl)-4methylmorpholinium chloride (DMTMM-HCl, >96%, Sigma-Aldrich) and 4-(4,6-Dimethoxy-1,3,5-triazin-2-yl)-4-methylmorpholinium tetrafluoroborate (DMTMM-BF4, 97%, Sigma Aldrich) were used as purchased without further purification. 2-Methyl-2-oxazoline (MeOx, 98%, Sigma-Aldrich) was distilled to dryness over barium oxide (BaO) and stored in a nitrogen atmosphere.
The chain transfer agent (CTA), 2-(((butylthio)-carbonothioyl)thio)-propanoic acid was prepared according to a literature procedure. 35 Amine-terminated poly(2-ethyl-2-oxazoline) (PEtOxNH2) was synthesized following a literature procedure. 36 2-(pyridyldithio)-ethylamine hydrochloride (PDS) was obtained from Speed Chemical, China. Cyanine5 amine was purchased from Lumiprobe. CellLight™ ER-GFP, BacMam 2.0 and CellLight™ Golgi-GFP, BacMam 2.0 were purchased from Thermo Fisher Scientific.
+ Open protocol
+ Expand
7

Live-cell Imaging of Lysosomal Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Vero cells on glass bottoms of 24-well SensoPlates (Greiner bio-one, 662892) were transfected with CellLight Actin-RFP, BacMam 2.0 (Molecular Probes, C10502) 1 dpi and CellLight Lysosomes-GFP, BacMam 2.0 (Molecular Probes, C10507) the night before imaging at 3 dpi. CellLight reagents were used at concentrations recommended by the manufacturer. Cells were washed to remove CellLight reagents before imaging on a Nikon ECLIPSE Ti spinning disk confocal fluorescence microscope. For imaging of LAMP1+ vesicles fusing with CCV membranes, cells were incubated at 37°C with 5% CO2 and imaged at 1 frame every 2 sec. For LatA (Sigma) treatment, cells were imaged at room temperature at 1 frame per min. Imaging started 15 min before adding LatA followed by 30 min post-treatment.
+ Open protocol
+ Expand
8

Live-cell imaging of actin dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were grown in plastic 96-well plates (Corning) and stained with Hoechst for 10 min, followed by three PBS washes before imaging with fresh media. Cells in the 96-well plates were placed in a 37 °C environmental chamber supplied with 5% CO2 (ImageXpress Micro XL). The plates were imaged with the ImageXpress Micro XL epifluorescence microscope (Molecular Devices Incorporated) controlled by MetaXpress software (version 5.0.2.0. Molecular Devices Incorporated). Images were captured through a 40 × 0.75 NA dry objective with 2 × 2 binned resolution. For blebbing analysis, images were taken every 1 min. For F-actin-labeled live cell imaging of parental HeLa and Tet-On HeLa, the cells were incubated with CellLight Actin-RFP, BacMam 2.0 (Thermo Fisher Scientific, catalog C10583) 48 h before imaging, and Tet-On HeLa cells were treated with doxycycline 24 h before imaging. Images were captured every 5 min.
+ Open protocol
+ Expand
9

Multicolor live cell imaging of tubulin and molecular tracers

Check if the same lab product or an alternative is used in the 5 most similar protocols
HepG2 cells and U251 cells were seeded
onto a single-well glass bottom dish at 2.0 × 104 cells/well
in a final volume of 100 μL and incubated for ∼24 h at
37 °C, 5% CO2. CellLight tubulin–GFP, BacMam
2.0 (Thermo Fisher Scientific) was added to the cells (1 μL
per well) and incubated for further 24 h, at 37 °C, 5% CO2. After removal of the medium, 10 μM TP–TMR in the medium was added to the cells and incubated for a designed
period. For evaluation of the effects of MT-binding drugs, 10 μM
taxol or 10 μM colchicine was coincubated with 10 μM TP–TMR at the same time. For evaluation of the endosomal
escape, 0.1 mg/mL FITC–transferrin was coincubated with 10
μM TP–TMR at the same time. After washing
with PBS, the cells were incubated with 5 μg/mL Hoechst 33342
for 10 min at 37 °C, 5% CO2. After washing with PBS,
the medium was added to the cells and fluorescence images were acquired. TP–TMR was excited with 550 nm and observed through
a 574 nm emission band-pass filter (red). Tubulin–GFP was excited
with 489 nm and observed through a 510 nm emission band-pass filter
(green). FITC–transferrin was excited with 495 nm and observed
through a 519 nm emission band-pass filter (green). Hoechst 33342
was excited with 352 nm and observed through a 455 nm emission band-pass
filter (cyan).
+ Open protocol
+ Expand
10

Ce6-Erastin Induced Ferroptosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ce6 was bought from J&K Scientific Co, China. Erastin was purchased from Selleck Chemicals, USA. Dead Cell Apoptosis Kit with Annexin V FITC and PI and CellLight® Lysosomes-GFP, BacMam 2.0 were purchased form ThermoFisher Scientific, USA. ROS assay kit and Hoechst 33342 staining solution for live cells, 100X were purchased form Beyotime, China. Extracellular O2 consumption reagent (ab197242), anti-GAPDH antibody (ab181602) and anti-SLC7A11 antibody (ab175186) were purchased from Abcam.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!