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28 protocols using anti cd16 fitc

1

Comprehensive Immune Cell Profiling by FCM

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FCM assay was conducted as we previously reported with several modifications [2 (link), 15 (link)]. In details, the unstimulated MNCs (day 0) and the MNC-derived cells (day 7, day10, day 14) were harvested by centrifugation at 1200 rpm for 5 min at room temperature (RT) and washed by 1 × PBS for twice. Then, the cells were resuspended in phosphate buffer solution (PBS) contained 2% fetal bovine serum (FBS) and labelled with the fluorescence conjugated antibodies including anti-CD3-PE, anti-CD3-FITC, anti-CD4-PE, anti-CD8-PE-Cy7, anti-CD56-APC, anti-CD16-FITC, anti-NKG2D-Percp5.5, anti-NKp44-APC-Cy7, anti-NKp46-PE-Cy7, anti-NKG2A-PE, anti-CD107a-PE, 7-AAD, PI or Annexin V-FITC (BD Biosci, USA) in dark for 30 min. Finally, the cells were washed by 1 × PBS for twice and turned to FACS Canto II (BD Biosci, USA) flow cytometer for detection and FlowJo 10.0 software (Tree Star, USA) for analysis. The detailed information of the indicated antibodies was listed in Additional file 1: Table S2.
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2

Multiparameter Flow Cytometry Analysis

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Flow cytometry analyses were performed on an LSR Fortessa flow cytometer (BD Biosciences). Automatic compensation was performed using CompBeads (BD Biosciences). Fluorescence minus one controls were performed to define gates of positivity. Following antibodies and reagents were used: biotinylated anti-CD11b, anti-CD33 PE-Cy7, anti-HLA-DR PE-Cy7, anti-CD15 FITC, anti-CD8 PE, anti-CD4 APC-Hy, anti-CD127 FITC, anti-CD16 FITC, anti-CD45 RO PE, andi-CD45 RA FITC, anti-CD95 PD-CF594, anti-PD-1 APC, anti CD62L APC (BD Biosciences); anti-CD14 APC-Cy7, anti-CD3 BV 605, anti-CD3 PE/Dazzle 594, anti-CD4 PE-Cy7, anti-CD4 PerCPCy5.5, anti-CD56 PE-Cy7, andi-CD28 FITC, anti-CD27 APC, anti-ICOS APC-Cy7, anti-CD137 PE, anti-CD137 APC, Zombie Yellow Fixable Viability Kit (BioLegend); eFluor 450 labeled streptavidin, anti-CD8 APC-H7, anti-Foxp3 APC, anti-CCR7 APC, anti-TIM3 eFluor 450, anti-TIGIT PE, anti-LAG3 PerCPeFluor710 (eBioscience), anti-CD25 PE (Myltenyi Biotec) and anti-OX40 APC (R&D Systems).
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3

Immunophenotyping of PBMC Subsets

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PBMCs were assessed for CD4 and CD8 cell phenotypic characterization, activation marker expression, and frequency of different populations of NK and B cells. PBMCs were stained with anti-CD3 PE/Dazzle 594 (Biolegend), anti-CD62L PE, and anti-CD31 PE/Cy7 for phenotypic characterization; anti-CD3 PE/Dazzle 594 (Biolegend), anti-CD8 APC/Cy7, anti-HLA-DR Percp5.5, anti-CD38 FITC, anti-CD25 APC, and anti-CD127 PE/Cy7 for activation marker analysis; and anti-CD3 PE/Cy7, anti-CD56 APC/Cy7, anti-CD16 FITC, anti-CD19 APC, and CD27 PE for NK and B cell phenotyping (all from BD Biosciences) in the second tube for 30 min at room temperature in the dark. CD4 cells in the first two tubes were identified as CD8 À CD3 + cells. The cells were washed and fixed by adding 3% formaldehyde and were acquired within 24 h to obtain 50 000 gated lymphocyte events by FACSAria Fusion (BD Biosciences). The data were analyzed using FACSDiva software.
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4

Flow Cytometric Analysis of Immune Cells

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This was undertaken according to our previously published methods (33 (link)). The method utilized whole blood analysis with red cell lysis using Easylyse (BD Biosciences) and with anti-CD56 PE, anti-CD16 FITC, anti-CD3 PE Cy5 and anti-CD69 APC (all supplied by BD Pharmingen). Flow cytometric analysis was undertaken on a Facscalibur (BD Biosciences), and using Cellquest Pro software. A minimum number of 10,000 cells were counted.
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5

Cytokine Production and Degranulation of NK Cells

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IFN-γ and TNF-α production by NK cells was evaluated in all samples available for phenotypic analysis after overnight stimulation with or without IL-12 and IL-18 (5 ng/mL) in the presence of 10 µg/mL of brefeldin A (BFA) added during the last 3 h of culture. Surface staining with anti-CD3-PE, anti-CD56-PE-CF594, and anti-CD16-FITC (BD Bioscience, Franklin Lakes, NJ, USA) was performed. Then, cells were fixed with medium A reagent and permeabilized with medium B reagent (Nordic Mubio, Lifespan Biosciences, Seattle, WA, USA) in accordance with manufacturer’s instructions. Cytokine determinations were performed by intracellular cytokine staining (ICS) with anti-IFN-γ-PerCp-Cy5.5 (BioLegend, San Diego, CA, USA) and anti-TNF-α-APC (BioLegend, San Diego, CA, USA) monoclonal antibodies and analyzed by flow cytometry. The CD107a degranulation assay was performed to assess the cytotoxic potential. Cells were stimulated overnight with IL-12 and IL-18 (as above), then incubated with K562 target cells for the last 4 h in the presence of BFA and anti-CD107a-PE-Cy7 (BD Bioscience, Franklin Lakes, NJ, USA).
Data are expressed as the difference between the percentage of cytokine or CD107a-positive+ NK cells in the stimulated and unstimulated samples.
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6

Characterization of Peripheral Blood Immune Cells

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Peripheral blood mononuclear cells (PBMCs) were isolated from 12 mL of peripheral venous blood samples collected in K3EDTA tubes (BD vacutainer) by centrifugation using a Ficoll-Paque gradient and were frozen at −80°C. Prior to flow cytometry analyses, cells were thawed, and PBMCs subtypes were distinguished using the following antibodies: anti-CD45-Pacific orange (Invitrogen), anti-CD3-V450 (BD Biosciences), anti-CD4-PE-texas red (Invitrogen), anti-CD8-APC-H7 (BD Biosciences), anti-CD19-PE-Cy7 (BD Biosciences), anti-CD14-PerCP-Cy5 (BD Biosciences), anti-CD16-FITC (BD Biosciences), anti-TLR2-PE (eBiosciences), and anti-TLR4-APC (eBiosciences) (all made in mouse). Data acquisition was performed using a BD LSR II flow cytometer, and the results were analyzed with BD eDiva Software (version 6.1.2, BD Biosciences) and FCS Express 4 Flow Cytometry (De Novo Software).
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7

Longitudinal Lymphocyte Phenotyping Analysis

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Absolute lymphocyte count (ALC) and lymphocyte phenotype were evaluated weekly for 4 weeks, monthly for 12 months, and every 6 months thereafter, as previously described [30 (link)]. The fluorochrome labeled monoclonal antibodies anti-CD3-Alexa 700, anti-CD3-PerCP, anti-CD4-V450, anti-CD4-PE, anti-CD8-APC Fluor780, anti-CD8-PacBlue, anti-CD16-FITC, anti-CD20 PECy7, anti-CD45-PerCP, anti-CD45RA-APC, anti-CD56-APC, anti-Ki67-FITC and anti-CD197 PECy7 (BD Biosciences, Franklin Lakes, NJ), and anti-CD45RA-QDOT655 (Invitrogen, Carlsbad, CA) were used. ALC was determined using Trucount beads (BD Biosciences). Cells were interrogated using an LRSII Flow Cytometer (BD Biosciences), and data were analyzed using FlowJo software (Tree Star, San Carlos, CA). Memory and regulatory phenotypes were defined as previously described [31 (link)–34 (link)].
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8

Flow Cytometric Analysis of Lymphocyte Subsets

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Samples of EDTA anticoagulated peripheral blood (5 mL) were collected from three groups’ patients. All samples were tested within 6 h of being obtained. Briefly, CD3+/CD4+/CD8+ T-cell, CD19+ B-cell, CD3CD16+CD56+ NK-cell, CD3+CD16+CD56+ NKT-cell, CD4+CD25+CD127 Treg-cell, CD3+HLA-DR+ T-cell and CD4+HLA-DR+ T-cell, CD8+ CD28+, and CD16+CD56+CD69+ counts (%) were measured by multiple-color flow cytometry with human monoclonal anti-CD3-FITC, anti-CD4-PE, anti-CD8-APC, anti-CD19-PE, anti-CD16-FITC, anti-CD56-APC, anti-CD25-PE, anti-CD127-BV421, anti-HLA-DR-Alexa700, anti-CD28-BV510 and anti-CD69-PE antibodies (BD Multitest) according to the manufacturer’s instructions. The cells were analyzed by flow cytometry system (Becton Dickinson, USA) according to the operating procedure.
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9

Immunophenotyping of Myeloid Malignancies

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A total of 5 £ 10 5 PBMCs were initially labeled with either anti-MUC1 SEA antibody DMB5F3 (murine ascites diluted to 1/200) or anti-MUC1 tandem repeat antibody HMFG1 diluted to 1/200 in PBS, followed by phycoerythrin (PE)-conjugated goat F(ab')2 anti-mouse IgG (Beckman Coulter Immunotech, Marseille, France). To characterize AML cells, anti-CD14 PECy7 (BioLegend, San Diego, CA), anti-CD34 APC, anti-CD38 V450, and anti-CD34 APC (all three from BD Biosciences, Le Pont de Claix, France) were reacted with cells. To specifically identify CMML cells, a battery of antibodies to CMML-associated antigens was used, including anti-CD16 FITC, anti-CD56 PercpCy5.5, and anti-CD45 APC (all three from BD Biosciences) and anti-CD14 PB (BioLegend). To identify AML presumed stem cells, a cocktail of lineage-specific FITC-labeled antibodies (anti-CD3, CD14, CD16, CD19, CD20, and CD56) as well as anti-CD34 and anti-CD38 (all from BD Biosciences) was used.
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10

Multiparameter Functional Immune Profiling

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Monoclonal antibodies including Comp-BV510, anti-NKG2C-PE, anti-NKG2A-APC-Cy7, anti-CD3-PerCP, anti-CD16-FITC, anti-CD56-PE-Cy7 were obtained from BD Bioscience (San Jose, CA); anti-CD107a-APC, anti-IFN-γ-BV421, and anti-IL-10-APC were purchased from Biolegend (San Diego, CA). The isotype control mAbs were purchased from the corresponding companies.
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