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Hypersep c18 column

Manufactured by Thermo Fisher Scientific
Sourced in United States

The Hypersep C18 column is a chromatography column used for sample preparation and analyte purification. It features a C18 stationary phase and is designed for reversed-phase liquid chromatography applications.

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18 protocols using hypersep c18 column

1

Phosphopeptide Enrichment and Analysis

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Samples were cleaned up using a hypersep C-18 column (60101-302, ThermoFisher) and then loaded on a Fe-NTA column (kit 88300, ThermoFisher), as described by the manufacturer. Eluted peptides were dried down in a speed vac to dryness. Phosphopeptides were resuspended in buffer A as per the manufacturer’s instructions immediately prior to nanoflow liquid chromatography-tandem mass spectrometry (nanoLC-MS/MS).
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2

Isolation and Labeling of N-Glycans

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Following heat denaturation of 50 μg recombinant GluN1 LBD for 5 min at 90 °C, 1 μL sequencing grade trypsin (Promega; 1 mg/mL in 50 mM ammonium carbonate, pH 8.0) was added and incubated at 37 °C for 18 h after mixing. The trypsinized sample was again incubated at 90 °C for 5 min to denature the trypsin, followed by cooling for 5 min on ice. PNGase F (1 μL; glycerol-free; New England BioLabs) was then added to the sample and incubated at 37 °C for 18 h. A Hypersep C18 column (ThermoFisher) was washed with 3 × 1 mL methanol then 3 × 1 mL 5% acetic acid. Free N-glycans were isolated by applying the sample, diluted in 5% acetic acid, over the C18 column and collecting the flow through. Wash fractions (3 × 1 mL 5% acetic acid were collected in the same tube, then frozen and lyophilized. The lyophilized sample was resuspended in 200 μL ddH2O by vortexing and then transferred to a microcentrifuge tube, frozen, and lyophilized. The sample was then resuspended in 10 μL of ddH2O. A stock solution containing 2 M sodium cyanoborohydride, 1 M procainamide and 50% acetic acid (10 μL) was added to the sample, mixed and incubated for 18 h at 37 °C. The sample was then lyophilized and resuspended into 10 μL ddH2O.
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3

Quantification of Polyphenols in Grape Skin Fermentation

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Standards for p-hydroxycinnamic acid, neochlorogenic acid, chlorogenic acid, rutin, polydatin, rosmarinic acid, and epicatechin gallate (EGCG; Shanghai Yuanye Biotechnology Co., Ltd. Shanghai, China) were weighed accurately, and a 0.1 mg/mL solution was prepared using methanol. Grape skin fermentation solution produced by lactic acid bacteria was extracted with a HyperSep C18 column (Thermo Scientific, 320 Rolling ridge Drive, Bellefonte, PA.), eluted with methanol–water (1:1, V/V), and filtered through a 0.22 μm filter. Fermentation components were detected (UltiMate3000 HPLC System, Thermo Fisher Scientific) using the following chromatographic conditions: Accucore C18 column (4.6 mm × 150 mm, 2.6 µm, Thermo Fisher Scientific); flow rate of 0.5 mL/min; detection wavelength of 285 nm; injection volume of 10 L; column temperature of 30 °C; collection time of 75 min; acetonitrile for mobile phase A (Thermo Fisher Scientific, USA); and 0.1% aqueous acetic acid solution for mobile phase B. The gradient elution conditions are shown in Table 1.
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4

Oxytocin Quantification by Enzyme Immunoassay

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Oxytocin was pretreated to solid phase extraction using a Hyper Sep C18 column (3 mL/200 g, 608–303, Thermo Fisher Scientific, Waltham, MA, USA). Oxytocin concentrations were quantified using a DetectX® Oxytocin Enzyme Immunoassay Kit (K048-H5, Arbor Assays LLC, Ann Arbor, MI, USA, goat anti-rabbit IgG). The standard curve ranged from 16.38 to 10,000 pg/mL, with a sensitivity and detection limit of 17.0 pg/mL and 22.9 pg/mL, respectively. The absorbance was measured at 450 nm using an iMark microplate reader (Bio-Rad, Tokyo, Japan). The intra-assay and inter-assay coefficient of variation (%CV) were 2.86% and 9.71%, respectively.
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5

Tannin Extraction from Wine Samples

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The method for extraction of wine was according to previously methods reported by Watrelot et al., 2017 , Duan et al., 2021 (link) with modified. Briefly, a Hypersep C18 column (1 g, 6 mL column, ThermoFisher scientific) was slowly conditioned with methanol and deionized water, respectively. 1 mL of wine sample was added and slowly eluted with 5 mL of methanol. Four mL of methanol was then added to remove the methanol from the filling to obtain a tannin eluate. The tannin eluate was taken in a 15 mL centrifuge tube and concentrated to dryness by rotary evaporation at 35 °C. The residues were dissolved with 1 mL methanol; the solution was collected, protected from light, and stored at −40 °C for further analysis.
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6

Quantification of Leukotriene B4 in Biological Samples

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To the homogenate supernatant fractioned for quantification of LTB4, a solution with internal deuterated standards (Cayman Chemical Co Ann Arbor, MI, USA) was added in a known concentration for the identification of LTB4. Samples were acidified with 50 µL of HCl (1N), centrifuged and applied in HYPERSEP C18 column (Thermo Scientific, Rockwood, TN, USA) as previously described [41 (link)]. The HPLC/MS/MS (LC Shimadzu—ESI Triple TOF 5600+ SCIEX) method for identification and quantification of lipid mediators was optimized using stationary phase chromatographic column C18 Ascentis EXPRESS (Supelco—St. Louis, MO, USA) [47 (link)]. The data processing was obtained by the PeakView 2.1 and MultiQuant 3.0 programs (AB Sciex, Foster, CA, USA).
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7

In-Gel Mass Spectrometry Sample Preparation

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Proteins in the eluate were analyzed on a 6 to 15% SDS-PAGE gradient gel. Each lane was diced, and gel pieces were put into 1.5-mL microcentrifuge tubes. The samples were prepared by adapting standard protocols for in-gel mass spectrometry sample preparation (84 (link)). Incubation with 10 mM dithiothreitol (DTT) was carried out for 45 min at 55°C in order to reduce disulfide bonds. Afterwards, carbamidomethylation of cysteines was with 55 μM iodoacetamide for 30 min at room temperature (in the dark). Gel pieces were washed with gel wash buffer (25 mM ammonium bicarbonate and 50% acetonitrile) and dehydrated with 100% acetonitrile prior to drying in a SpeedVac vacuum centrifuge (Thermo). Trypsin digestion was carried out in 25 mM ammonium bicarbonate containing 10 μg mL−1 MS-grade trypsin protease (Pierce), and the mixture was incubated overnight at 37°C. Peptides were subsequently extracted by a two-step process, which was repeated twice: incubation of gel pieces with 5% formic acid (Sigma-Aldrich), followed by 100% acetonitrile. To remove residual salts, the peptide samples were desalted using a HyperSep C18 column (Thermo Fisher Scientific) according to a previously described procedure (84 (link), 85 (link)). C18 column-eluted samples were dried by vacuum centrifugation and frozen prior to mass spectrometry.
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8

Proteome-Wide Ubiquitin Profiling

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Samples (5 mg) were precipitated with chilled acetone (−20 °C, overnight). After centrifugation (10 min, 4 °C, 16,000g) and removal of the detergent-containing supernatant, pellets were resuspended in 6 M Urea with 200 mM ABC. Samples were reduced with dithiothreitol (5 mM, 37 °C, 60 min) and alkylated in the dark with iodoacetamide (10 mM, 25 °C, 30 min). The resulting protein extract was first diluted to 2 M urea with 200 mM ABC for digestion with endoproteinase LysC (1:100 w:w, 37 °C, o/n, Wako, cat #129-02541) and then diluted twofold with 200 mM ABC for trypsin digestion (1:100 w:w, 37 °C, 8 h, Promega cat #V5113). After digestion, peptide mix was acidified with formic acid 0.1% and desalted with a Hypersep C18 column (Thermo Fisher P/N 60108-305). Immunoaffinity purification of K-ε-GG peptides was performed using PTMScan Ubiquitin Remnant Motif (K-ε-GG) Kit (Cell Signaling, P/N 5562S) following manufacturer’s instructions75 (link). Enriched peptides were desalted using MicroSpin C18 column (The Nest Group, Inc) prior to mass spectrometric analysis.
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9

Quantitative Analysis of Insect Tea Compounds

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The reference substances of isochlorogenic acid A, isochlorogenic acid B, isochlorogenic acid C, quercetin, rutin, kaempferin, neochlorogenic acid, hesperidin, and cryptochlorogenic acid were precisely weighed and added to 2 ml of chromatographic methanol. The reference substances were fully shaken, and the reference substance reserve solution was obtained. The liquid phase conditions were as follows: mobile phase A: 0.5% acetic acid water; mobile phase B: acetonitrile; flow rate: 0.5 ml/min; chromatographic column: HyperSep C18 column (Five micron, 4.6 × 150 mm, Thermo Fisher Scientific, Inc.); injection volume: 10 µl; column temperature: 30°C; detection wavelength: 280 nm; and gradient conditions: 0–30 min, 12%–45% (acetonitrile); 30–35 min, 45%–100% (acetonitrile); and 35–40 min, 100% (acetonitrile). The composition of Insect tea extract was determined by using the UltiMate3000 HPLC System (Thermo Fisher Scientific, Inc.).
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10

Quantitative ITPL Analysis by HPLC

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We dissolved ITPL in dimethyl sulfoxide to obtain a 10 mg/ml solution, which we diluted with 50% methanol to obtain a 2 mg/ml ITPL solution sample. We filtered the ITPL sample and the standard solution through a 0.22 μm membrane and assayed a sample volume of 10 μl. The chromatographic conditions included a Hypersep C18 column (4.6 mm × 150 mm, 5 μm); mobile phase A, 0.5% acetic acid water; mobile phase B, acetonitrile; flow rate, 0.5 ml/min; column temperature, 25°C; and detection wavelength, 280 nm (Ultimate 3000, Thermo Fisher Scientific) (Li et al., 2019).
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