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26 protocols using ab9797

1

Immunohistochemical Analysis of Gingival and DF Tissues

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For immunohistochemical staining, gingival tissue and DF tissue were fixed in 10% buffered formalin for 1 day, embedded in paraffin, and then sectioned at a thickness of 3 μm. The specimens were subjected to IHC staining with antibodies specific for CXCL10 (rabbit polyclonal, diluted 1 : 50; Ab9807, Abcam, Cambridge, UK), CSTA (rabbit polyclonal, diluted 1 : 2,000; Ab61223, Abcam), AMBN (rabbit polyclonal, diluted 1 : 200; Ab116347, Abcam), and CXCL12 (rabbit polyclonal, diluted 1 : 50; Ab9797, Abcam). Endogenous peroxidase activity was quenched via addition of 3% hydrogen peroxide. The sections were incubated in 5% bovine serum albumin to block nonspecific binding. The primary antibodies were diluted to facilitate optimal staining, and the sections were incubated overnight. After incubation, EnVision+ System HRP-Labeled Polymer anti-rabbit (K4003, Dako North America, Inc., CA, USA) was applied for 20 min. Color development was performed using labeled streptavidin biotin kits (Dako) according to the manufacturer's instructions.
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2

Western Blot Analysis of SDF1 Protein

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The lysis of NPCs was performed for total protein with a RIPA lysis buffer (Beyotime Institute of Biotechnology). The concentrations of every group were tested using a BCA protein quantitation kit (Beyotime Institute of Biotechnology). Proteins from cell lysates were separated via 12% SDS-PAGE (Beyotime Institute of Biotechnology) and 40 µg protein was loaded per lane, then transferred to polyvinylidene fluoride membranes (EMD Millipore), which were blocked using 5% skimmed milk for 1 h at room temperature. The membranes were incubated at 4°C overnight with primary antibodies against SDF1 (1:1,000; ab9797, Abcam) and GAPDH (1:3,000; 10494-1-AP, Proteintech Group, Inc.). After being washed in a TBST solution, the membranes were incubated with horseradish peroxidase-conjugated secondary antibodies (1:1,000; A0208, Beyotime Institute of Biotechnology) for 1 h at 37°C. The protein bands were detected using an ECL kit (Wanleibio Co., Ltd.) and a chemiluminescence imaging system (Fusion SOLO S, VILBER). Protein expression was quantified using EvolutionCapt SL6 software (v16.0.8.0, Vilber Lourmat Sté).
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3

Immunocytochemical Analysis of Neural Progenitor Cells

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The coverslips for each condition were taken out of 24-well plates. The NPCs were fixed with 4% paraformaldehyde for 15 min and permeabilized with 0.1% Triton X-100 for 3 min at room temperature. Then, NPCs were blocked with goat serum (Sigma-Aldrich; Merck KGaA). Subsequently, NPCs were incubated with SDF1 primary antibody (1:200; ab9797, Abcam), type II collagen primary antibody (1:200; ab185430, Abcam) and aggrecan primary antibody (1:200; ab36861, Abcam) at 4°C overnight. The next day, the slides were washed with PBS solution three times and incubated with FITC or Cy3 conjugated secondary antibodies (A0562 and A0521, Beyotime Institute of Biotechnology)for 1 h at 37°C. Cell nuclei were stained with DAPI (Beyotime Institute of Biotechnology)for 3 min at room temperature. Images were gathered using a fluorescence microscope (magnification, ×200; Leica Microsystems, Inc.).
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4

Transwell Migration Assay for BMSC and MB Cells

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Migration assays were carried out in a 24-well transwell system equipped with porous (8 μm) polycarbonate membranes. 2 × 105 MB cells were resuspended in 600 μL of growth medium supplemented with 1% FBS and plated into the lower chamber of the transwell system; 5.0 × 104 BMSC cells were resuspended in 200 mkl of growth medium supplemented with 1% FBS and plated into Transwell inserts which were then placed into another transwell system with the lower chamber filled with 600 μl of serum-free medium. After 24 hours the cells on the inserts or in lower chambers were transfected as indicated, 6 hours after the transfection the media was changed and the inserts with BMSC, were placed into the wells with MB cells and incubated at 37 °C for 24 h. When indicated, CXCR4 (Abcam, #ab10403) or SDF1 (CXCL12) (Abcam, #ab9797) antibodies were added to the medium at 10 mkg/ml and 4 mkg/ml concentrations respectively. The inserts were then discarded, and upper sides of the filters were swabbed to remove the cells that did not cross the membrane. The cells present on the lower side of the filters were then fixed in 4 % paraformaldehyde, stained with DAPI and the counted under the microscope. All the experiments were performed in duplicate. The following control antibodies were used: rabbit IgG control (AB-105-C, R&D systems) and mouse IgG2b isotype control (MAB004, R&D systems).
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5

Immunohistochemistry Analysis of CXCL12 in OSCC

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Immunohistochemical staining was carried out as described previously.16 A rabbit anti‐SDF1 (CXCL12) polyclonal Ab (1:200 dilution, ab9797; Abcam), mouse anti‐α‐smooth muscle antigen (α‐SMA) monoclonal Ab (1:50 dilution, M0851; CiteAb) and mouse anti‐CD8 monoclonal Ab (prediluted, clone C8/144B; DAKO) were used. We evaluated the correlation between CXCL12 expression and OSCC histological grades based on the World Health Organization (WHO) and YK classifications.17, 18 Immunohistochemistry was performed and evaluated by pathologists (Akira Takasawa and Makoto Osanai). To accurately quantitate CXCL12 expression levels over entire tumor areas, we measured the positively stained areas using ImageJ software (NIH) as described previously.19 Muscle cell areas were quantified using ImageJ software.
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6

Cytokine Signaling: In Vitro Assay

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Recombinant human IL-6 (#AF-200-06, PeproTech, Rocky Hill, USA), recombinant murine SDF-1a (CXCL12) (#250-20A, PeproTech, Rocky Hill, USA), recombinant murine MCP-1 (#250-10, PeproTech, Rocky Hill, USA), Anti-hIL-6-IgG (#mabg-hil6-3, InvitroGen, Carlsbad, USA), Anti-SDF-1 (CXCL12) antibody (ab9797, Abcam, Cambridge, UK), Anti-MCP-1 antibody (ab25124, Abcam, Cambridge, UK).
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7

SDF-1α Modulation of BEAS-2 and THP-1 Co-culture

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BEAS-2 cells were treated with 3 ng/mL rabbit anti-SDF-1α antibody (ab9797;
Abcam) relative to immunoglobulin G control (ab172730; Abcam,). BEAS-2 and THP-1
cells were then co-cultured in transwell chambers and treated with 800 mmol/L
BPDE and 12.5 µg/mL SiNPs for 48 hours. EMT was analyzed in cells or xenograft
tissues.
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8

Subchondral Bone Histomorphometry Analysis

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TRAP staining (Sigma-Aldrich, Missouri, USA) and immunostaining were performed according to the manufacturer’s instructions. Serial sections were incubated with primary antibodies to anti-Osterix (Abcam, ab22552; Santa Cruz, sc-393060), anti-Ki-67 (Immunoway, YM-3064), anti-p-S6 ribosomal protein (Ser235/236) (Cell Signaling Techonlogy, #2211), anti-Cxcl12 (Abcam, ab9797), anti-CXCR4 (Abcam, ab124824), anti-collagen X (Abcam, ab58632), and anti-MMP-13 (Abcam, ab39012) overnight at 4 °C. For immunofluorescent staining, secondary antibodies conjugated with fluorescent tags were added and slides were incubated at room temperature for 1h in dark. Photomicrographs of sections were captured to perform histomorphometric measurements on the entire area of the tibial subchondral bone with ZEISS Scope A1 (Zeiss, Heidelberg, Germany), Quantitative histomorphometric analysis was conducted in a blinded fashion using the OsteoMeasure XP Software (OsteoMetrics, Inc., Atlanta, USA). The number of positively stained cells in the entire tibia subchondral bone area was counted in three sequential sections per mouse in each group.
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9

Integrin Beta-6 Monoclonal Antibody Protocol

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The mouse-anti-human monoclonal antibody R6G9 (IgG2a), which is directed against the extracellular domain of human integrin subunit β6, was obtained from Chemicon International (Temecula, CA, U.S.A.). The following monoclonal antibodies were obtained from Abcam (Cambridge, MA, U.S.A.): ab5694 and ab28244, which target the CAF markers α-SMA and FAP, respectively: ab27969, which targets transforming growth factor β (TGF-β); and ab9797, ab9695, ab16828, and ab6672, which target the four cytokines stromal cell-derived factor-1 (SDF-1), epidermal growth factor (EGF), basic fibroblast growth factor (bFGF), and interleukin 6 (IL-6). EP1186Y and EP1254 monoclonal antibodies, which target matrix metalloproteinase (MMP) 3 (MMP-3) and MMP-9, respectively, were also purchased from Abcam. Reagents for SDS/PAGE and molecular weight markers were obtained from Bio-Rad Laboratories (Hercules, CA, U.S.A.). The C–X–C chemokine receptor type 4 axis (CXCR4) antagonist AMD3100 was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, U.S.A.).
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10

Immunohistochemical Profiling of CXCL12, CD8, and FoxP3

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Formalin-fixed at 4°C for 24 h, paraffin-embedded tissues, obtained from the Department of Pathology, West China Hospital of Stomatology, were consecutively cut into 5-µm sections and transferred onto silanized glass slides. Immunohistochemistry for CXCL12, CD8 and FoxP3 was performed using standard procedures (8 (link),9 (link)). Briefly, 5-µm tissue sections were dewaxed and rehydrated using xylene and graded alcohol washes. The slides were heated to 121°C for 2 min for antigen retrieval in citrate buffer (pH 6.0). Following serial blocking with 3% hydrogen peroxide and 5% normal goat serum (cat. no., ZLI-9022; OriGene Technologies, Inc.) at 37°C for 20 min, the sections were incubated with primary monoclonal antibody against CD8 (dilution, 1:100; clone C8/144B; Dako), CXCL12 (dilution, 1:400; cat. no. ab9797; Abcam) or FoxP3 (dilution 1:100; cat. no. ab20034; Abcam) for 16 h at 4°C. The sections were then incubated with biotinylated goat anti-mouse immunoglobulin and peroxidase-conjugated streptavidin (dilution, 1:100; cat. no., cat. no., ab64255; Abcam) at 37°C for 30 min. The enzyme substrate was 3,3′-diaminobenzidine tetrahydrochloride. Tissue section were analyzed using a light microscope. Negative controls were performed with PBS instead of the primary antibody.
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