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C18 column

Manufactured by YMC
Sourced in Japan, United States, China

The C18 column is a type of chromatography column used for the separation and purification of various chemical compounds. It contains a stationary phase made of silica particles that are chemically modified with octadecyl (C18) functional groups. This column is commonly used in high-performance liquid chromatography (HPLC) and liquid chromatography-mass spectrometry (LC-MS) applications to separate and analyze a wide range of organic compounds, such as pharmaceuticals, peptides, and other biomolecules.

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74 protocols using c18 column

1

HPLC Analysis of Aflatoxin B1 Degradation

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AFB1 and the subsequent degradation products were analyzed using HPLC (Waters Alliance 2695, Milford, MA, USA) equipped with a YMC C18 column (250 × 4.6 mm, 5 μm) and a UV detector set at 360 nm [62 (link)]. A volume of 10 μL of samples was injected and eluted with the mobile solvent consisting of water/methanol/acetonitrile (48:40:12, v/v/v) at a constant flow rate of 0.8 mL/min at 30 °C. The limit of detection (LOD) was 0.01 μg/mL AFB1 and the limit of quantitation was 0.05 μg/mL AFB1 under the experimental conditions used. The concentration of AFB1 was determined using external calibration curves of the standard AFB1 solution at different concentrations. The percentage of AFB1 degradation was calculated using the following formula: AFB1 degradation (%) = (1 − remaining AFB1 in sample/total AFB1 in control sample) × 100.
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2

Structural Characterization of Compounds

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The HR-ESI-MS spectra were performed on Waters Xevo G2-XS QTOF mass spectrometer (Waters, Milford, MA, USA). NMR spectra were measured on a Bruker Avance-600 spectrometer (Bruker, Karlsruhe, Germany) in DMSO-D6 operating at 600 MHz for 1H NMR, HMBC and HMQC, 150 MHz for 13C NMR, respectively. Tetramethylsilane (TMS) was used as internal standard. Column chromatography was performed with silica gel (200–300 mesh) purchased from Qingdao Ocean Chemical Group Co. Ltd (Qingdao, China). Thin-layer chromatography was conducted on silica gel G plates (Qingdao Marine Chemical Inc.). Semi-preparative HPLC with 1525 binary pump combined Waters 2998 UV detector (Waters Co., Milford, MA, USA.) and YMC C18 column (5 μm, 20 mm × 10 mm; YMC Co., Ltd., Japan) were also used to isolate the compounds. Methanol (MeOH) and acetonitrile (ACN) were HPLC grade (Fisher, USA). Purified water was purchased from YiBao Co, Ltd (Shenzhen, China). Other solvents used were analytical grade (Beijing Chemical Works, Beijing, China).
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3

Spectroscopic Analysis of Natural Compounds

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Optical rotations were measured on a Perkin-Elmer 341 automatic polarimeter (Perkin-Elmer). UV spectra were recorded in MeOH (1 mg/50 mL) on a UV 210A spectrophotometer (Shimadzu). NMR spectra were recorded on a Bruker DRX-500 and DRX-400 spectrometer (Bruker). The chemical shifts (δ) are reported in ppm using tetramethylsilane as an internal standard and the coupling constants (J) are given in Hertz (Hz). HRESI-MS spectra were recorded on Agilent G3250AA (Agilent) and AutoSpec Premier P776 spectrometers (Waters). Column chromatography (CC) was performed on self-packed open columns with silica gel from Qingdao Haiyang Chemical Co., Ltd (QHCC). Thin layer chromatography (TLC) analyses were conducted on glass sheets of silica gel GF254 from QHCC and detected under a UV lamp at 254 or 365 nm and visualized by spraying 8 % phosphomolybdic acid-EtOH solution (w/v) or 5 % vanillin-H2SO4 (w/v) followed by heating, or visualized with iodine (I2). Semi-preparative high performance liquid chromatography (HPLC) (Agilent 1200 Series) was performed on an YMC C18 column (250 mm × 10 mm, 5 μm, YMC Karasuma-Gojo Bldg.). Fractions from all columns were collected by an auto-collecting apparatus and were combined according to TLC analyses. All other solvents and reagents were commercially purchased from Beijing Greenherbs Science and Technology Development Co., Ltd. and distilled prior to use.
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4

Flavone Analysis in O. indicum Extracts

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Applied from Sithisarn et al., 2021, the analysis of flavones in the O. indicum extracts was performed using Agilent Tech 1260 Infinity II with a 1260 DAD and 1260 vial sampler (Agilent, Santa Clara, CA, USA). A YMC C18 column (150 mm × 4.6 mm, 3 µm particle size) from YMC (YMC, Kyoto, Japan) was used for the identification of the flavones. Gradient elution was performed with water/0.1% formic acid (solvent A) and acetonitrile (solvent B) at a constant flow rate of 800 µL/min. The composition was changed from 70% A to 10% A in 20 min. The column temperature was 40 °C, with an injection volume of 5 µL. UV detection was performed at 285 nm. A mass spectrometric analysis of the extracts from O. indicum was conducted using a mass spectrometer detector (G6125B) with a gas temperature of 325 °C, drying gas of 12.0 L/min and nebulizer pressure of 1294 Torr. The retention times, UV and mass spectra of the obtained peaks were compared with the reference standards.
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5

Tautomerization Kinetics of Organic Compounds

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Appropriate amounts of compounds 1a, 1b, 2a and 2b were separately weighed, and each compound was divided into two equal portions, placed in amber sample vials, and dissolved in methanol to obtain sample solutions with concentrations of 1.0 mg/mL. The solutions were sealed and separately stored at 30 °C and 45 °C. Each sample solution was analysed by HPLC every hour until tautomerization occurred. Then, the analysis was performed every 24 h until equilibrium was achieved. Chromatographic analysis was performed on a Waters 2996/Waters 2487 (Waters, Milford, MA, USA) equipped with a YMC C18 column (4.6 mm × 250 mm, 5 μm) with acetonitrile-water (23–70) implemented as the mobile phase for isocratic elution. The flow rate was 1.0 mL·min−1, and the column temperature was 25 °C. The detection wavelength was 230 nm. The stability of 1a, 1b, 2a, 2b and the time taken to reach equilibrium under different temperatures were observed.
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6

Quantitative Analysis of DNA Depurination

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After a predetermined time, the products of depurination reactions were directly analyzed with an HPLC system (Elite, Dalian, China) using a YMC C18 column (250 × 4.6 mm, particle size 5 μm; YMC, Kyoto, Japan). The amounts of adenine and guanine, released from the DNA, were quantitatively measured. Independently, the DNA substrate was treated under strong conditions to complete the depurination, and the total amount of purines in the DNA was determined by HPLC. The percentage of depurination was evaluated as described in our previous paper 3, and the average value for depuration of adenine and guanine was used unless noted otherwise. In the reactions of salmon DNA, the reaction products were first treated with 1 U DNase I (Thermo Scientific, Pittsburgh, PA, USA) at 37 °C for 10 min to digest the macromolecular DNA, and then subjected to HPLC analysis.
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7

Flavone Analysis in O. indicum Extracts

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Applied from Sithisarn et al., 2021, the analysis of flavones in the O. indicum extracts was performed using Agilent Tech 1260 Infinity II with a 1260 DAD and 1260 vial sampler (Agilent, Santa Clara, CA, USA). A YMC C18 column (150 mm × 4.6 mm, 3 µm particle size) from YMC (YMC, Kyoto, Japan) was used for the identification of the flavones. Gradient elution was performed with water/0.1% formic acid (solvent A) and acetonitrile (solvent B) at a constant flow rate of 800 µL/min. The composition was changed from 70% A to 10% A in 20 min. The column temperature was 40 °C, with an injection volume of 5 µL. UV detection was performed at 285 nm. A mass spectrometric analysis of the extracts from O. indicum was conducted using a mass spectrometer detector (G6125B) with a gas temperature of 325 °C, drying gas of 12.0 L/min and nebulizer pressure of 1294 Torr. The retention times, UV and mass spectra of the obtained peaks were compared with the reference standards.
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8

HPLC Analysis of Depurination Kinetics

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A 230II type of HPLC system (Elite, Dalian, China) and YMC C18 column (250×4.6 mm, 5 µm; YMC, Kyoto, Japan) were used for depurination analysis. The following HPLC conditions were used to separate free purines: a linear gradient from 4% to 14% (20 min) acetonitrile in the water containing 50 mM ammonium formate; a flow rate of 0.5 mL/min; detection at 260 nm; and 10 µL of loaded reaction solution.
For precise quantification, uracil was used as the internal standard. Release of purines in each experiment under strong conditions (pH 1.6 and 100°C for 1 h; with the same concentration of uracil as the internal standard) was served as the total purines for calculating the percentage of depurination. The percentage of released adenine or guanine (Pt) after a period of time (t) can be calculated by this formula: Pt = SP×SU0/(SU×SP0), where SP and SU are the peak areas for removed purines (adenine or guanine) and uracil (internal standard) in the sample groups for analysis; SP0 and SU0 are the peak areas under strong conditions for removing purines totally. The rate constants (k) of depurination were obtained when the percentages of depurination were less than 20% and calculated by averaging the data of released adenine and guanine.
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9

Ergosterol Extraction and Quantification

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For the ergosterol extraction, 2 ml of n-hexan (Thermo Scientific, Waltham, MA, USA) were added to 10 ml of the matrix suspension prepared as previously described. This preparation was then submitted to vortex for 1 min. This procedure was performed three times and the top solution sequestered to a 10 ml amber bottle. After the extraction, the solutions were dried with nitrogen until all the organic solvent has evaporated. The dried extract was resuspended in 2 ml of methanol, filtered with a 0.45 μm filter into an Eppendorf tube and stored at -20°C (Marín et al. 2006) . For the ergosterol quantification, the high-pressure liquid chromatography (HPLC) method was performed in a Varian STAR 9002 (Varian, Walnut Creek, CA, USA) using a C18 column (YMC, Allentown, PA, USA). An isocratic mobile phase of 100% of methanol with a flow of 1 ml min -1 , for 20 min, was used for the quantification of each sample. The results were automatically shown by the HPLC detector (Marín et al. 2006) , and then normalized by g of dry weight biofilm and presented as μg of ergosterol per g of dry weight of biofilm (μg g -1 biofilm).
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10

HPLC Analysis of Chemical Compounds

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A high performance liquid chromatography (HPLC) system was equipped with variable wavelength detector (VWD, SHMADZU, Japan). Chromatographic separation was performed on C18 column (250 mm × 4.6 mm, 5.0 μm; YMC Co., Ltd., Kyoto, Japan) at 30 °C. The mobile phases were acetonitrile (A) and 0.1% H3PO4 in H2O (B), with the following gradient (A to B): 10–90% (0–2 min), 13–87% (2.1–6.5 min), 16.5–83.5% (7.5–8.5 min), 80-20% (21 min), 100-0% (21.1-24 min), 10–90% (24.1–26 min). The flow rate and injection volume were 1.5 ml/min and 50 μl, respectively. The chromatogram was recorded at 280 and 232 nm.
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