Initially, a standard 1D 1H experiment was acquired using a water flip-back Watergate for water suppression. The imino 1H region, 10.0–15.0 ppm, was inspected to assure that the duplex was properly formed. Duplex formation is ascertained from qualitatively visualizing peak shape (30±10 Hz imino linewidth) and counting the appropriate number of peaks. Imino resonances from terminal base pairs are known to exchange rapidly with solvent and are usually not observed. For duplex oligonucleo-tides, most other imino resonances from the Watson–Crick pairs should be observed.
A 2D nuclear Overhauser effect spectroscopy (NOESY) experiment also employing a water flip-back Watergate for solvent suppression was then collected at typically two different mixing times (e.g., 100 and 300 ms). This standard experiment allows the user to map sequential correlations of imino resonances along the length of the sequences. This assignment process has been reviewed extensively (Flinders & Dieckmann, 2006 ).