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14 protocols using mab003

1

Isolation and Culture of Cardiac Fibroblasts

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Human cardiac fibroblasts were prepared as follows: right atrial biopsies were weighed, minced into 1–2 mm3 pieces, and placed in 6-cm dishes. Human cardiac fibroblasts were grown and maintained in DMEM (11995- 065, Gibco) supplemented with 20% fetal bovine serum (FBS, 10500, Hyclone) and 1% penicillin–streptomycin (15140-122, Gibco), in a humidified atmosphere at 37 °C and 5% CO2. The medium was renewed every 2–3 days. At 80–90% confluence, cells were passaged using standard trypsinization techniques. This protocol was also used to isolate fibroblasts from mouse atria, ventricles and kidneys. Human primary kidney fibroblasts (H-6016; CellBiologics) were cultured in specific medium (M2267, CellBiologics). All experiments were carried out at low cell passage (< P4) and cells were cultured in serum-free media for 16 h before treatment.
Antibodies and inhibitors used in this study were as follows: IgG type 2a (MAB003, R&D Systems), anti-IL-11 antibody (MAB218, R&D Systems), anti- IL11RA antibody (MAB1977, R&D Systems), brefeldin A (B7651, Sigma-Aldrich), cycloheximide (C1988, Sigma-Aldrich), PD98059 (9900, Cell Signaling), and U0126 (9930, Cell Signaling).
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2

Cell Surface CAIX Expression Analysis

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1.0 × 106 cells were trypsinized and re-suspended in FACS Buffer (PBS pH 7.4+3% FBS). Cells were incubated with either anti-mouse CAIX (R&D Systems, MAB2188) or a control anti-mouse IgG2a (R&D Systems, MAB003) at 1:100 for 30 min on ice. Cells were washed with 1 ml FACS buffer and pelleted at 1200 rpm for 5 min. The supernatant was aspirated and cells were incubated with anti-mouse IgG2A AlexaFluor 647 (Invitrogen Life Technologies, A21241) at 1:200 for 30 min on ice. In the case of MDA231 cells growing in hypoxia, the above two antibody incubation steps were performed in the hypoxia chamber. Cells were washed and resuspended in 200 μl of FACS buffer containing 1:10 000 propidium iodide (Sigma-Aldrich, P4170). 1.0 × 105 events were collected for each sample on a BD FACS Calibur (BD Biosciences, San Jose, CA, USA) and the data were analyzed using FlowJo Software (FlowJo LLC, Ashland, OR, USA).
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3

TGF-β1 Transgenic Mice Immune Modulation

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TGF-β1 Tg+ or TGF-β1 Tg− mice were injected intraperitoneally (i.p.) with neutralizing antibodies raised against CD25 (Li et al., 2008 (link); Liu et al., 2010 (link)) or FGF-9 (Li et al., 2008 (link)). For CD25 neutralizing studies, 125 μg of anti-CD25 (Biolegend # 101906) or IgG2b isotype control (Biolegend #400622) was injected on days 4, 7, and 10 of doxycycline administration and mice were sacrificed on day 14. For FGF-9 blocking experiments, 250 μg of anti-FGF-9 (R&D #MAB273) or IgG2A isotype control (R&D #MAB003) were injected on days—1, 2, 5, 8, and 11 of doxycycline administration and mice were sacrificed on day 14.
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4

Maternal Anti-BMP Antibody Effects on Neonatal Retinal Development

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Lactating dams were injected i.p. once on P3 with PBS, mouse monoclonal isotype control Abs (15 mg/kg, IgG2b, MAB004; 15 mg/kg, IgG2a, MAB003; R&D Systems), or mouse monoclonal anti-BMP9 and anti-BMP10 Abs (15 mg/kg, IgG2b, MAB3209; 15 mg/kg, IgG2a, MAB2926; R&D Systems, respectively). As controls, groups of neonates were directly injected i.p. on P3 with PBS or the same mouse monoclonal isotype control or anti-BMP9 and anti-BMP10 Abs (15 mg/kg). Neonates were euthanized by CO2 asphyxiation on P6 and non-heparinized blood was collected. Neonates were enucleated and eyes fixed in 4% paraformaldehyde for 20 min on ice and retinas were isolated.
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5

Neutralizing Angiogenic Factors in GC

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The GC cells were seeded in a T75 tissue culture flask and grown to 40–50% confluence (depending on the growth rate of the cell lines). The growth medium was then replaced with serum‐free medium to further culture for 24 h, and the supernatants were harvested for future assays. For neutralization experiments, the neutralizing antibody against TIMP1, PAI1 or IGFBP1 was preincubated at 4 °C with 1 mL supernatant for 6 h, then used for HUVECs coculture in tube formation experiments. The neutralizing antibodies against TIMP1 (AF970‐SP; R&D Systems, Minneapolis, MN, USA), PAI1 (AF1786‐SP; R&D Systems), IGFBP1 (MAB675‐SP; R&D Systems) and control antibody (MAB003; R&D Systems) were 0.2, 1.5, 20 and 5 µg·mL−1, respectively.
The conditioned media (CMs) used in the experiments were: (a) rIL35, serum‐free medium with different concentrations of recombinant IL35 (Cloud‐Clone Corp., RPC008Hu01); (b) supernatants from HGC27 cells that were cultured with rIL35 for 24 h; (c) supernatants from the pc‐IL12A, pc‐EBI3 and pc‐Ctrl HGC27 cells, respectively; (d) supernatants from the sh‐IL12A, sh‐EBI3 and pYr‐ctrl AGS cells, respectively; (e) supernatants from pc‐IL12A HGC27 cells pretreated with PAI1, IGFBP1 or control neutralizing antibodies for 6 h, respectively; and (f) supernatants from sh‐IL12A AGS cells pretreated with TIMP1 or control neutralizing antibodies for 6 h, respectively.
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6

Extracellular TIMP2 Tyrosine Phosphorylation

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For in vivo protein-protein interaction studies and extracellular TIMP2 tyrosine phosphorylation experiments, cells were seeded overnight followed by serum starvation for 18–24 h. Different anti-c-Src antibodies or IgG isotype controls were added to the serum free media for 1 h at 1μg/ml followed by the addition of purified recombinant TIMP2-His6 at 50 ng/ml for 2 h.4 (link) Pulldowns Ni-NTA were performed as described above to detect tyrosine phosphorylation and in.4 (link) Co-precipitations were performed for protein interaction studies.
Anti-c-Src antibodies used for blocking experiments: rabbit anti-Src mAb1 (32G6, biotinylated) (Cell Signaling, #8077), rabbit (DA1E mAb IgG XP Isotype control, biotinylated) (Cell Signaling, #4096), mouse anti-Src mAb2 (Clone 327) (Abcam, #ab16885), rabbit IgG (Abcam, #ab172730), mouse anti-Src mAb3 (L4A1) (Cell Signaling, #2110), rabbit anti-Src mAb4 (36D10) (Cell Signaling, #2109), rabbit anti-Src mAb5 (32G6) (Cell Signaling, #2123), mouse anti-Src mAb6 (clone 327537) (R&D systems, MAB3389), mouse IgG2A Isotype control (Clone #20102) (R&D systems, MAB003), rabbit pAb (aa 84–110) (custom antibody) (see key resources table).
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7

Immunofluorescence Assay for Zika Virus Detection

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Infected cells from the OSGC at the time when 50% of virus particles are released (BT50) were fixed with 4% PFA for 20 min at room temperature, washed, and permeabilized with 70% ethanol. Subsequently, cells were washed twice in PBS and incubated for 1 h in the dark and at room temperature with anti-Flavivirus group antigen (MAB10216, clone D1-4G2-4-15, 1:200 dilution; Millipore, Germany) or mouse IgG2a isotype control (MAB003, 1:50 dilution; R&D Systems) in PBS containing 0.1% bovine serum albumin (BSA). Afterward, the cells were washed three times with PBS–0.1% BSA and incubated for 1 h with goat anti-mouse IgG2a conjugated with Alexa Fluor 488 (1:250 dilution; Life Technologies, Inc., The Netherlands) in PBS–0.1% BSA at room temperature and in the dark. After 1 h, cells were washed three times and mounted with ProLong Diamond Antifade mountant with DAPI (4′,6-diamidino-2-phenylindole [Life Technologies, Inc., USA]). Zika virus-infected cells were identified by use of a Zeiss LSM 700 confocal laser scanning microscope fitted on an Axio observer Z1 inverted microscope (Zeiss). All images were processed using Zen 2010 software (Zeiss). Per sample, 5 high-power fields were photographed and scored blindly by three individuals to determine the percentages of infected and noninfected cells.
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8

Molecular Expression and Mutagenesis of Mycobacterial HBHA

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The pET30a vector (in our laboratory) was used as an expression vector for N. cyriacigeorgica GUH-2 HBHA in E. coli. The plasmid pK18mobsacB (in our laboratory) was used to construct the hbha deletion mutant. Anti-TLR4 (NB100-56727, Novus Biological, USA), anti-TLR2 (NB100-56726, Novus Biological, USA), and IgG2A isotype control (MAB003, R&D, USA) were used in the present study. The following antibodies were purchased from Cell Signaling Technology (Danvers, USA): anti-p-Jnk (4668), anti-p-ERK1/2 (4370), anti-p-p38 (4511), anti-p-p65 (3033), and anti-β-actin (7074). The following pharmacological inhibitors were purchased from Sigma-Aldrich (St. Louis, MO, USA): p38 (SB203580), ERK1/2 (PD98059), JNK (SP600125), and NF-κB (BAY 11-7082). The endotoxin removal kit was purchased from GenScript (Nanjing, China). Human and mouse TNF-α, IL-6, and IL-10 ELISA kits were used in this study (BD, USA). DAPI (4′,6-diamidino-2-phenylindole, dihydrochloride) and Alexa Fluor® 488 donkey anti-mouse IgG were purchased from ThermoFisher Scientific (Carlsbad, CA, USA). The adjuvant was purchased from Biodrago (Suzhou, China).
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9

Radiolabeling of Anti-Claudin-4 Monoclonal Antibody

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Modification of anti-claudin-4 mAb with p-SCN-Bn-DTPA and subsequent radiolabelling with indium-111 were conducted following methods described by Brom et al. [16 ]. In brief, to a solution of anti-claudin-4 MAB4219 (200 μg) or mouse IgG2A (200 μg, MAB003, R&D Systems) in 0.1 M NaHCO3 (pH 9, 100 μl, Chelex treated) was added 20 M equivalents of p-SCN-Bn-DTPA (245.6 μM) in anhydrous dimethyl sulphoxide. The reaction mixture was incubated at room temperature for 30 min with gentle shaking (450 rpm), and the excess p-SCN-Bn-DTPA was removed by Sephadex-G50 size exclusion chromatography (Sigma-Aldrich). The affinity of the DTPA-conjugated MAB4219 for claudin-4 was evaluated by flow cytometry in Panc-1 and HT1080 cells and compared to that of the unmodified antibody.
Indium-111 in 0.02 M hydrochloric acid (sourced from Mallinckrodt Pharmaceuticals) was added to a 2-mg/ml solution of the DTPA-modified antibody to achieve a ratio of at least 1 MBq to 1 μg. The reaction mixtures were incubated at room temperature for 1 h, and the radiolabelling efficiency was determined by iTLC using an eluent of 0.1 M sodium citrate buffer (pH 5.5). The crude reaction mixture was purified by Sephadex-G50 size exclusion chromatography, eluting with 100-μl fractions of phosphate-buffered saline (pH 7.4).
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10

Modulating DNMT3A and TET2 Expression

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MDM were incubated for four days with 3 mg of IgG control (R&D systems, #MAB003) or anti-Interferon Alpha/Beta/Omega Receptor Chain 2 (IFNαR2) blocking antibody (Pbl assay science, #21385-1, Lot 7035), 2′,3′-dideoxycytidine (ddC) or 10 μM of human specific c-GAS inhibitor G-140 (Invivogen, inh-g140). Effect in DNMT3A or TET2 ASO was calculated as relative to that measured in cells transfected with Scramble ASO.
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