The largest database of trusted experimental protocols

7 protocols using bl21 codonplus de3 rp

1

E. coli Plasmid Purification and Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
E. coli strain XL1-Blue (Stratagene, La Jolla, California) was used to grow and purify plasmids. BL21-CodonPlus-RP (DE3) (Agilent Technologies) and Rosetta (DE3) Competent Cells—(Novagen) were used for protein expression.
+ Open protocol
+ Expand
2

Characterization of Avian Reovirus Protein muNS

Check if the same lab product or an alternative is used in the 5 most similar protocols
DF-1 cells32 (link) were grown in monolayers in medium D-MEM supplemented with 5% foetal bovine serum (FBS), 2% of 4 mM L-glutamine and 1% antibiotic mix (penicillin and streptomycin). Sf9 cells (Thermo Fisher Scientific) were grown in suspension in medium SF-900II supplemented with 5% foetal bovine serum (FBS), 2% of 4 mM L-glutamine and 1% antibiotic mix (penicillin and streptomycin). E. coli strain XL1-Blue (Stratagene, La Jolla, California) was used to grow and purify plasmids. BL21-CodonPlus-RP (DE3) (Agilent Technologies) was used for protein expression.
Rabbit polyclonal antiserum against avian reovirus S1133 muNS protein was raised in our laboratory4 (link). Monoclonal antibody specific for SV5 Tag was obtained from Life Technologies. The following secondary antibodies were used as appropriate for different experiments: Alexa Fluor 594 conjugated antibodies against mouse or rabbit IgG; Alexa Fluor 488 conjugated antibodies against rabbit IgG (Invitrogen, Barcelona, Spain). Peroxidase-conjugated goat anti-rabbit IgG antibodies (Sigma-Aldrich, Madrid, Spain) were used for Western-blot analysis.
+ Open protocol
+ Expand
3

Purification of Recombinant Tau and α-Synuclein

Check if the same lab product or an alternative is used in the 5 most similar protocols
Escherichia coli BL21-CodonPlus (DE3)-RP (Agilent) was transformed with a pET28a plasmid encoding WT or P301L tau (full-length 0N4R). Terrific broth cultures (1 l) supplemented with 50 mg/l kanamycin or 50 mg/l chloramphenicol were inoculated with 20 ml of starter cultures and grown for 8 h. The cultures were induced with 1 mM IPTG and grown for another 16 h. Cells were harvested and resuspended in 50 ml/l 20 mM MES, pH 6.8, 1 mM EGTA, 1 mM magnesium chloride, 5 mM DTT, and 1 cOmplete protease inhibitor cocktail (Roche) followed by microfluidizer lysis. The lysates were boiled for 20 min and centrifuged at 48,400g. The cleared lysates were applied to a cation exchange column (SP Sepharose Fast Flow; GE Healthcare), and fractions were eluted with a sodium chloride gradient. Fractions containing 0N4R tau were applied to a reversed-phase HPLC column and eluted with an acetonitrile gradient (1%/min) + 0.1% TFA gradient; the peak fractions were then lyophilized. The lyophilizates were dissolved in PBS + 1 mM DTT and purified by size-exclusion chromatography (HiLoad 26/600 Superdex 200 pg; GE Healthcare). Peak fractions were analyzed by SDS-PAGE, and fractions containing <95% 0N4R tau were pooled, snap-frozen, and stored at −80 °C. Recombinant full-length α-synuclein and tau repeat domain (K18) were expressed and purified as previously described (72 (link), 73 (link)).
+ Open protocol
+ Expand
4

Recombinant SARS-CoV-2 Nucleocapsid Protein Purification

Check if the same lab product or an alternative is used in the 5 most similar protocols
pET28 plasmid bearing SARS-CoV-2 N-protein fused to a C-terminal His6-tag (a kind gift from S. Pasqualato, Human Technopole, Milan, Italy) was expressed in Escherichia coli BL21-CodonPlus (DE3)-RP (Agilent) upon induction with 500 µM isopropyl-β-d-1-thiogalactopyranoside for 16 h at 18 °C. Cells were resuspended in resuspension buffer (25 mM Tris pH 8, 500 mM NaCl, 5% glycerol, 2 mM β-mercaptoethanol and 10 mM imidazole), supplemented with protease inhibitors and TurboNuclease and sonicated. After polyethyleneimine addition and centrifugation, the supernatant was applied onto Ni-NTA agarose beads (Qiagen) and the His6-nucleocapsid protein was eluted in elution buffers containing 250 mM and 500 mM imidazole. The eluted protein was applied on a HiTrap Heparin HP column (Cytiva) and loaded on a Superdex 200 Increase 10/300 GL (Cytiva) pre-equilibrated in SEC buffer (25 mM Tris pH 8, 500 mM NaCl and 2 mM β-mercaptoethanol). Protein purity was assessed by Comassie blue SDS–PAGE as >90% pure.
+ Open protocol
+ Expand
5

Affinity Purification of HA-Tagged Proteins from Yeast and Bacterial Extracts

Check if the same lab product or an alternative is used in the 5 most similar protocols
GST- and HA-modified proteins were synthesized in E. coli strain BL21-CodonPlus DE3-RP (Agilent), overproducing selected tRNAs to avoid poor translation.
Crude protein extracts from induced E. coli transformants were prepared by sonication. Similar amounts of released GST fusion proteins (according to GST enzyme assays) were bound to glutathione (GSH) sepharose and incubated with yeast or bacterial total protein extracts containing HA fusions of Sin3, Cyc8 or Tup1. Washing conditions and elution of GST fusions together with prey proteins using free GSH have been described (Wagner et al. 2001 (link)). Eluted proteins were analyzed by SDS/PAGE and subsequently transferred to a PVDF membrane. HA-tagged proteins could be visualized by treatment with anti-HA-peroxidase conjugate (monoclonal antibody 12CA5 conjugate; Sigma-Aldrich) and POD chemiluminescent substrate, using a digital imager (ChemoStar, Intas).
+ Open protocol
+ Expand
6

Heterologous Expression and Purification

Check if the same lab product or an alternative is used in the 5 most similar protocols
The E. coli strains Top 10 (Life Technologies Corporation), BL21 (DE3) and BL21-CodonPlus(DE3)-RP (Agilent Technologies GmbH) were used for cloning and heterologous expression experiments. Electrocompetence of cells was achieved by repeated washing with diluted glycerol. Transformation was carried out in 2 mm cuvettes at 2.5 kV in a Gene Pulser Xcell electroporator (Bio-Rad) or according to the manual for commercially available chemical competent Top 10 cells (Life Technologies Corporation). Cells were grown in Luria broth (LB) medium, with appropriate antibiotics, whenever needed.
Plasmids used in this study were the pET-28a(+)-based expression vector (Merck KGaA) pET28-fre carrying a NAD(P)H-dependent flavin reductase gene (fre) combined with a 5′-sequence coding for a hexahistidine-tag, the pET-28b(+)-based expression vector pXU520 (for the production of recombinant XiaF with N-terminal histidine-tag), the pET-28c(+)-based expression vector pET28c-xiaP (for the production of recombinant XiaP with N-terminal histidine-tag) and the pET-26b(+)-based expression vector pET26b(+)-xiaF (for the production of recombinant XiaF with N-terminal histidine-tag used for crystallization).
+ Open protocol
+ Expand
7

Purification and Labeling of Actin-Binding Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chicken skeletal muscle actin was purified as described previously (Spudich and Watt, 1971 (link)). Fimbrin Fim1 and acetylation mimic tropomyosin AlaSer-Cdc8 (WT and I76C mutant) were expressed in BL21-Codon Plus (DE3)-RP (Agilent Technologies, Santa Clara, CA). His-tagged Fim1 was purified using Talon Metal Affinity Resin (Clontech, Mountain View, CA) (Skau and Kovar, 2010 (link)). Cdc8 was purified by boiling the cell lysate, performing an ammonium sulfate cut, and running on an anion exchange column (Skau and Kovar, 2010 (link)). His-tagged wild-type α-actinin Ain1 and mutant Ain1(R216E) were expressed in High Five insect cells using baculovirus expression and purified using Talon Metal Affinity Resin (Li et al., 2016 (link)).
The A280 of purified proteins was taken with a Nanodrop 2000c Spectrophotometer (Thermo-Scientific, Waltham, MA). Protein concentration was calculated using extinction coefficients Fim1: 55,140 M−1 cm−1, Cdc8 (WT and I76C mutant): 2,980 M−1 cm−1, Ain1 and Ain1(R216E): 86477 M−1 cm−1. Proteins were labeled with TMR-6-maleimide (Life Technologies, Grand Island, NY) or Cy5-monomaleimide (GE Healthcare, Little Chalfont, UK) dyes following manufacturer’s protocols following purification. Proteins were flash-frozen in liquid nitrogen and stored at −80°C.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!