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9 protocols using percp vio700

1

Multicolor Flow Cytometry Immunophenotyping

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The following antibodies for the detection of cell surface markers were used at the indicated dilution: CD86 ANTIBODY, anti‐human, FITC, REAfinity™ (Miltenyi Biotec 130‐116‐262 1:100); CD86 antibody, anti‐human, PerCP‐Vio® 700, REAfinity™ (Miltenyi Biotec 130‐116‐164 1:100); CD80 antibody, anti‐human, PE (Miltenyi Biotec 130‐117‐683 1:100); PE mouse anti‐human CD83 (BD Pharmigen™ 556855 1:20); PE/cyanine7 anti‐human CD1a antibody (Biolegend 300121 1:100); CD169 (Siglec‐1) antibody, anti‐human, PerCP‐Vio® 700, REAfinity™ (Miltenyi Biotec 130‐101‐508 1:100); BV421 anti‐human CD169 (Biolegend 346018 1:100); BV421 mouse anti‐human CD206 (BD Pharmigen 564062 1:20); FITC ##man CD209 (DC‐SIGN; BD Pharmingen™ 551264 1:100); PerCP/cyanine5.5 anti‐human CD1c antibody (Biolegend 331514 1:50); Brilliant Violet 421™ anti‐human CD141 (Thrombomodulin) antibody (Biolegend 344113 1:50); CD327 (Siglec‐6) Antibody, anti‐human, FITC, REAfinity™ (Miltenyi Biotec 130‐112‐898 1:50); BV605 mouse anti‐human CD11c (Biolegend 301636 1:50); FITC anti‐human CD195 (CCR5) Antibody (Biolegend 359120 1:100); and PerCP/cyanine5.5 anti‐human CD4 Antibody (Biolegend 300530 1:100).
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2

Multiparametric Flow Cytometry Profiling of Activated T Cells

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Stimulated cells were transferred to FACS tubes and washed. The cells were stained extracellularly for 10 min at room temperature with Viobility 405/452 Fixable Dye, antibodies against CD14, CD20, both conjugated to VioBlue (Miltenyi Biotec, Bergisch Gladbach, Germany) and CD4 conjugated to PerCP (BD Biosciences). Subsequently, the stained cells were permeabilized using the BD Cytofix/Cytoperm kit (BD Biosciences) according to manufacturer’s instructions. Permeabilized cells were then stained intracellularly for 10 min at room temperature with antibodies against IL-2 conjugated to BV605 (BD Biosciences), TNF- α conjugated to PE-Vio 770, CD154 conjugated to PerCP-Vio 700, and IFN-γ conjugated to APC-Vio770 (Miltenyi Biotec) according to the methods of the supplier. Stained cells were quantified with a MACSQuant16® analyzer flow cytometer (Miltenyi Biotec). FACS data were evaluated using FlowLogic software version 8.4 (Inivai Technologies, Victoria 3194 Australia). Reactive T cells were defined as CD4+ T cells expressing ≥2 of the following TH1 activation markers: CD154, IFN-γ, IL-2 and TNF-α. DMSO background controls were subtracted from the data shown. The gating strategy used for all analyses can be found in the supplementary material (Figures S1 and S2).
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3

Isolation and Characterization of Human Neutrophils

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Neutrophil isolation from whole human blood was done using MACSxpress Neutrophil Isolation Cocktail Kit (Miltenyi Biotec B.V. & Co. KG, Germany) according to the manufacturer’s instructions. Isolated cells were counted using Auto Hematology Analyzer BC-5300 (Mindray Medical Germany GmbH, Germany).
100 µl of isolated cells were mixed with antibodies against CD66b (neutrophils; 2 µl 1:4 diluted, Pacific blue-labelled; BioLegend, CA, USA), CD14 (monocytes; 1 µl undiluted, PerCP-Vio700-labelled; Miltenyi Biotec B.V. & Co. KG, Germany), CD3 (lymphocytes; 1 µl undiluted, VioGreen-labelled; Miltenyi Biotec B.V. & Co. KG, Germany) and CD45 (immune cells; 1 µl undiluted, PE-labelled; Miltenyi Biotec B.V. & Co. KG, Germany). After 10 min incubation at 4 °C, stained cells were washed with 1 ml cell wash by centrifugation for 5 min at room temperature (RT) and 300×g. The cell pellet was resuspended in 100 µl cell wash to analyze purity of the isolated cell fraction using FACS (BD FACSCanto II; BD Biosciences, San Jose, CA, USA). Using FACS analysis, we found that about 96–98% of cells were positive for CD66b indicating a very high amount of neutrophils in the obtained cells (data not shown). 2 × 106 cells in RPMI with 5% heat-inactivated human serum (50 µl) were added to the surrounding medium of the skin samples.
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4

Immune Cell Phenotyping from Mouse Blood

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Mononuclear cells were isolated using Histopaque 1083 (Sigma-Aldrich, St. Louis, MO, USA) according to the manufacturer’s instructions, using 1.5 mL of peripheral blood diluted 1:1 in PBS. Cells were resuspended in 500 µL of RPMI-1640 for maintenance or cytometry staining.
CD68 antibody anti-mouse coupled to PE-Vio615 (Miltenyi, Bergisch Gladbach, Germany; 130-112-674), CD4 antibody anti-mouse coupled to FITC (Miltenyi, 130-120-750), CD8a antibody anti-mouse coupled to PerCP-Vio700 (Miltenyi, 130-120-756), and CD335 antibody anti-mouse coupled to PE (Miltenyi, 130-112-201) were used for flow cytometry. The BD Cytofix/Cytoperm™ Fixation/Permeabilization Solution Kit (BD, Franklin Lakes, NJ, USA) was used to fix and permeabilize the cells. Washing steps and resuspension for analysis were performed in FACS buffer (PBS/EDTA/FBS).
Flow cytometry was performed according to the manufacturer’s instructions, following Miltenyi’s cell surface flow cytometry staining protocol for CD4, CD8a, and CD335, as well as their intracellular flow cytometry staining protocol for CD68.
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5

Isolation of ANDV-specific memory B cells

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PBMCs were isolated by Ficoll density gradient separation (Histopaque, Sigma-Aldrich) and stored in liquid nitrogen. To isolate antigenspecific B cells from the samples with ANDV-GP binding and high neutralization activity, PBMCs were rested overnight and ANDVspecific memory B cells were labeled using anti-CD19-peridinin chlorophyll protein (PerCP)-Vio700, anti-CD27-phycoerythrin (PE), and anti-IgM-allophycocyanin (APC) (Miltenyi Biotec) anti-human Abs and a fluorescent bait for ANDV-GP and isolated by cell sorting (BD FACSAria II) into single-cell wells.
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6

Ki-67 Expression in T-Cell Activation

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Ki-67 staining was performed after stimulation with anti-human CD3 and CD28 antibodies (T Cell TransAct™, Miltenyi Biotec) supplementation with IL-2 (PROLEUKIN®) and incubation for 72 h or 96 h in RPMI 1640 medium (Thermo Fisher Scientific) with 5% human AB serum (Sigma Aldrich), and 1% penicillin/streptomycin (Thermo Fisher Scientific) at 37˚C in a 5% CO2 atmosphere. Cells were harvested and fixed using 70% ethanol and stained with anti-human-Ki-67 (PerCP-Vio700, Miltenyi Biotec, clone REA183, Cat.# 130-100-292).
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7

Multiparametric Phenotyping of Peripheral Blood

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Peripheral blood-derived and in vitro cultured mononuclear cell populations were identified by a combination of physical parameters and immunostaining with saturating concentrations of the following fluorochrome-conjugated mAbs: anti-CD3 PerCP (clone: SK7, cat #: 347344; BD Biosciences) or PerCP-Vio700 (clone: REA613, cat #: 130-109-465; Miltenyi Biotec), anti-CD56 APC (clone: B159, cat #: 555518; BD Biosciences) or APC-Vio770 (clone: REA 196, cat #: 130-100-694; Miltenyi Biotec), CD16 PE (clone: B73.1, cat #: 347617; BD Biosciences) or PE-Vio770 (clone: REA423, cat #: 130-106-706; Miltenyi Biotec), anti-FcεRIγ subunit FITC (polyclonal antibody, cat #: FCABS400F; Merck), anti-NKp46 APC (clone: REA808, cat #: 130-112-122; Miltenyi Biotec), anti-NKG2C PE (clone: 134591, cat #: FAB138P; R&D Systems), anti-PLZF PE (clone: Mags.21F7, cat #: 12-9320-82; ThermoFisher Scientific), anti-PD-1 PE (clone: EH12.2H7, cat #: 329906; BioLegend), and anti-PD-L1 APC (clone: 29E.2A3, cat #: 329708; BioLegend). Samples were stained for surface antigens for 30 min at 4°C, washed with PBS (Euroclone) containing 2% FCS and 2 mM EDTA (used for all washing steps), fixed with 2% paraformaldehyde for 20 min at room temperature (RT), washed, permeabilized with washing solution supplemented with 0.05% Triton-X 100 for 30 min at RT, and stained for intracellular antigens for 30 min at 4°C.
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8

Isolation of Primary Mouse Liver Cell Types

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Primary HSCs were isolated from the mouse liver according to a reported protocol36 (link) that includes the following steps: in situ pronase/collagenase perfusion of mouse liver, in vitro digestion, density gradient-based separation, and flow cytometric sorting. After the density gradient-based separation, primary non-parenchymal liver cells were collected. Flow cytometric sorting was applied for isolation of HSCs (Retinoid+), hepatic macrophages (F4/80+), liver sinusoidal endothelial cells (CD146+) and natural killer cells (NK1.1+). Antibodies used in sorting were: anti-F4/80 conjugated to PE-Cy7 (eBioscience, 25-4801-82, 1: 50), anti-CD146 conjugated to PerCP-Vio700 (miltenyi, 130-103-865, 1: 10), anti-NK1.1 conjugated to PE (miltenyi, 130-102-400, 1: 10).
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9

Adaptive NK Cell Degranulation Assay

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Confluent HFF were infected at an MOI of 1 for 24 h and the infection rate was assessed by flow cytometry. Cells were thawed and cultured overnight prior to the degranulation assays. Expanded adaptive NK cells were co-cultured with uninfected HFF, HCMV-infected HFF (HFF-TB40-BAC), K562 cells or without target cells as a control at effector: target ratios of 1:1; 2:1 and 5:1. CD107a (PE-Vio770, clone: REA792) was added to the cultures and cells were incubated for 5 h at 37 °C, 5% CO2. Cells were washed and stained with antibodies directed against CD3 (Vio-Green, clone: REA613), NKG2C (APC, clone: REA205), CD57 (APC-Vio770, clone: REA769), CD56 (PerCP-Vio700, clone: REA196) and CD8 (VioBlue, clone: REA734) (Miltenyi, Bergisch Gladbach, Germany) for 10 min at 4 °C.
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