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4 protocols using ap1063

1

Mitochondrial Protein Characterization

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All the chemicals were obtained from Sigma-Aldrich unless otherwise specified. Following antibodies were used in this study: UCP1 antibody (ab-10983, Abcam), BCAT1 antibody (TA504360, OriGene), BCAT2 antibody (9432, Cell Signaling Tech), BCKDHA antibody (sc-271538, Santa Cruz), TOM20 antibody (11802–1-AP, Proteintech), COX-IV antibody (4850, Cell Signaling), OXPHOS cocktail (Abcam, ab110413), PDH-E1α antibody (sc-377092, Santa Cruz), PDH-E1α (pSer232) antibody (AP1063, Millipore), PDH-E1α (pSer293) antibody (ab177461, Abcam), PDH-E1α (pSer300) antibody (AP1064, Millipore), GAPDH antibody (sc-32233, Santa Cruz), and β-actin antibody (A3854, Sigma-Aldrich). Polyclonal antibody for SLC25A44 was generated by using amino acids (MEDKRNIQIIEWEHLDKKKC, MMQRKGEKMGRFQVC, and CKKLSLRPELVDSRH) as epitopes for immunization in rabbit (GeneScript).
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2

Western Blot Analysis of Adipose Tissue

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Protein lysates were generated from ≈80 mg of finely cut adipose tissue by homogenization in lysis buffer 28 using a tissue lyzer (Qiagen, Germany). Immediately after homogenization, SDS was added to a concentration of 2%. Samples were then centrifuged at 16,000g for 20 min at 4°C to generate lysates. The bicinchoninic acid assay (Thermo Fischer Scientific, MA) was used to determine the protein concentration in the samples and samples were adjusted to a protein concentration of 0.5 µg/µl in sample buffer.
An equal amount of protein was separated by SDS‐polyacrylamide gel electrophoresis (SDS PAGE) and blotted on to a PVDF membrane by semidry blotting. The membrane was then blocked for 1 h in 3% fish gel (FG) (Sigma Aldrich, Copenhagen, Denmark) and incubated overnight in primary antibody against AMPKα1 protein (Hardie G.), AMPKThr172 phosphorylation (#2535s Cell Signaling Technologies (CST), Danvers, MA), HSL protein, and HSLSer660 and Ser565 as well as perilipin (#8334S CST), GLUT4 protein (#PAI‐1065, ABR), PEPCK protein (#10004943, Cayman Chemical Co., Ann Arbor, MI), PDK4 protein (Hardie G.), PDH‐E1α protein (Hardie G.), PDHSer300 phosphorylation (Hardie G.), and PDHSer232 phosphorylation (#AP1063, Millipore). The following day the membrane was incubated in secondary antibodies (Dako) in 3% FG and quantified using LAS 4000 and Image Quant TL 8.1 (GE Healthcare, Germany).
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3

Mitochondrial Protein Characterization

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All the chemicals were obtained from Sigma-Aldrich unless otherwise specified. Following antibodies were used in this study: UCP1 antibody (ab-10983, Abcam), BCAT1 antibody (TA504360, OriGene), BCAT2 antibody (9432, Cell Signaling Tech), BCKDHA antibody (sc-271538, Santa Cruz), TOM20 antibody (11802–1-AP, Proteintech), COX-IV antibody (4850, Cell Signaling), OXPHOS cocktail (Abcam, ab110413), PDH-E1α antibody (sc-377092, Santa Cruz), PDH-E1α (pSer232) antibody (AP1063, Millipore), PDH-E1α (pSer293) antibody (ab177461, Abcam), PDH-E1α (pSer300) antibody (AP1064, Millipore), GAPDH antibody (sc-32233, Santa Cruz), and β-actin antibody (A3854, Sigma-Aldrich). Polyclonal antibody for SLC25A44 was generated by using amino acids (MEDKRNIQIIEWEHLDKKKC, MMQRKGEKMGRFQVC, and CKKLSLRPELVDSRH) as epitopes for immunization in rabbit (GeneScript).
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4

Quantification of Phosphorylated PDH Subunits

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In all, 1 × 106 AML cell lines were lysed in RIPA buffer and lysates were boiled at 100 °C r 10 min in Laemmli buffer after measuring protein concentration using Pierce BCA protein kit (Cat #23227). Equal amount of 20 μg was loaded to 4–15% mini Protean TGX precast gels for SDS-PAGE (Bio-rad Cat#4561085) and transferred with a Biorad Trans-blot Turbo transfer system to LF-PVDF membranes (Trans-blot Turbo RTA Transfer kit Cat#1704274). Membranes were blocked in Odyssey blocking buffer (Cat#927-40000) for 1 h and then incubated overnight at 4 °C with either of the following primary antibody mix; 1:1500 P-PDH Ser 232 (rabbit, Millipore AP1063), 1:1500 P-PDH Ser 300 (rabbit, Millipore, Calbiochem AP1064), 1:1500 P-PDH293 (Millipore, Calbiochem AP1062), 1:1000 PDH E1 alpha (mouse, Abcam, ab110330), 1:3000 Actin (mouse, Santa Cruz Biotechnology, SC-47778), 1:3000 Actin (rabbit, Cell Signaling Technology, 4970) or Oxphos cocktail 1:3000 (Thermo Fisher Scientific Cat#45-8199). Scanning of the membranes was performed with an Odyssey Clx scanner (Li-Cor Biosciences) after incubation with the following secondary antibodies (1:3000); Alexa Fluor 6 goat anti rabbit (Invitrogen, A21109) and IRDye 800CW donkey anti mouse (Li-Cor 926-32212).
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