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6 protocols using ab123946

1

Immunofluorescence Analysis of Macrophage Markers

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Cells were grown on coverslips overnight. Then cover cells to a depth of 2–3 mm with 4% formaldehyde diluted in warm PBS for 15 min in room temperature. Then aspirate fixative, rinse three times in 1 × PBS for 5 min each. After treating with 0.5% Triton-X100 (ThermoFisher, USA) diluted in warm PBS and blocking specimen in blocking buffer (5% Bovine Serum Albumin diluted in warm PBS, BioFroxx, Guangzhou, China) for 60 min in room temperature, primary antibodies were applied for 4  C overnight. AlexaFluor488- conjugated anti-mouse IgG (1:1000, Molecular Probes, A11029), AlexaFluor488-conjugated anti-rabbit IgG (1:1000, Molecular Probes, A11034) or AlexaFluor594-conjugated anti-rabbit IgG (1:1000, Molecular Probes, A11037) secondary antibodies were used in room-temperature for 1 h. Nuclei were counterstained with DAPI (1 μg/ml, Molecular Probes, D1306). Protein subcellular localization was analyzed under a Zeiss 510 META or Leica TCS-SP2 confocal laser scanning microscope. The concentration of primary antibody was rabbit anti-CD68 (1:200, Abcam, ab125212), rabbit anti-CD163 (1:200, Proteintech, 16,646–1-AP), rabbit anti-CD204 (1:200, Abcam, ab123946), rabbit anti-CD206 (1:200, Abcam, ab64693), mouse anti-Arg1 (1:200, Abcam, ab239731), rabbit anti-Mrc1 (1:200, Abcam, ab64693), rabbit anti-Fizz1 (1:200, Abcam, ab39626).
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2

Western Blot Analysis of Protein Expression

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RIPA lysate was used for extracting the total proteins from the tissue samples and HCC cells, which were quantified with the help of a BCA kit. About 30 μg of total proteins were then separated by way of 100 g/L SDS-PAGE gel electrophoresis. The segregated proteins were moved to a PVDF membrane and blocked using 50 g/L skim milk at room temperature for 2 h. The membranes were incubated with the primary antibodies specific for HMGA2 (CST, 8179, 1:1000 dilution), CD68 (Abcam, ab125212, 1:2000 dilution), CD163 (Abcam, ab182422, 1:1000 dilution), CD204 (Abcam, ab123946, 1:2500 dilution), Histone H3 (CST, 4499, 1:2000 dilution), or GAPDH (CST, 5174, 1:1000 dilution). Further incubation of the blots was conducted utilizing goat anti-rabbit IgG and goat anti-mouse IgG, followed by detection to visualize the bands with the help of the enhanced chemiluminescence (ECL) substrate (Thermo, Waltham, MA, USA).
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3

Immunohistochemical Analysis of SR-A in COPD

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Immunohistochemistry was used to analyze the protein levels and distribution of SR-A in lung tissues of COPD and control subjects. Lung tissues in paraffin were embedded and sectioned to 5 μm on the slides, and then dewaxed in xylene and rehydrated. Endogenous peroxidases were inhibited with 0.5% hydrogen peroxide in methanol for 10 min, followed by incubating overnight at 4°C with a rabbit monoclonal IgG antibody against SR-A (1:100, ab123946; Abcam, Cambridge, UK). Immunodetection was performed with diaminobenzidine, biotinylated goat anti-rabbit IgG reagent, and horseradish peroxidase (HRP) reagent.
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4

Analyzing Protein Expression in Mouse Spinal Cord and DRG

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Mouse spinal cord tissues (epicenter ± 0.3 cm) and DRG samples were collected and homogenized with 10 strokes of a homogenizer at 4°C in protein extraction buffer. Subsequently, protein concentrations were determined by the BCA method, and equal amounts of proteins were separated by 10% SDS-PAGE gel electrophoresis and transferred onto polyvinylidene fluoride (PVDF) membranes. After blocking with 5% skimmed milk or 5% Bovine Serum Albumin (BSA) for 2h at room temperature, the membranes were incubated overnight at 4°C with the following corresponding primary antibodies: anti-PD-L1 (1:1000, ab213480, abcam), anti-TRPV1 (1:1000, 508564, ZEN BIO, Chengdu, China), anti-iNOS (1:1000, ab178945, abcam), anti-Arg1 (1:1000, 16001-1-AP, proteintech, Wuhan, China), anti-β-actin (1:1000, ab123946, abcam), anti-ERK (1:1000, 4695, CST, Massachusetts, USA), anti-pERK1/2 (1:1000, 4370, CST), anti-p38 (1:1000, 8690, CST), anti-pP38 (1:1000, 4511, CST), anti-JNK (1:1000, 9252, CST), anti-pJNK (1:1000, 9255, CST). After washing and incubating with species-matched secondary antibodies (1:5000) at RT for 2 h, immunoreactive bands were visualized using ECL reagents (PE0010, Solarbio, Beijing, China) and the density of protein was quantified by the ImageJ (National Institutes of Health, Bethesda, MD, USA)
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5

Plasmid-based Knockdown and Overexpression

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The plasmids for SOX2 shRNA and mammalian and lentivirus-mediated protein overexpression were previously reported (Herreros-Villanueva et al., 2013 (link)). The plasmids for FGFR knockdown were constructed using pLKO-1 lentiviral expression vector and the detailed gRNA sequences are listed in Table 1. HA-tagged wild type AKT (HA-AKT), its dominant negative mutant version (K179M, AKT-KD) and HA-ubiquitin (HA-Ub) expression plasmids were acquired from Addgene. All chemical reagents and antibodies used in this study are commercially available. FGFR and AKT inhibitors were purchased from MCE (MedChemExpress), LLL12 was purchased from KareBay Biochem. The following primary antibodies were purchased from Cell Signaling Technology: P-AKT (CST, 4060#), AKT (CST, 4685#), P-STAT3 (CST, 9145#) STAT3 (CST, 9139#), P-FGFR (CST, 3476#), FGFR1 (CST, 9740#), FGFR2 (CST, 23328#), SOX2 (CST, 3579#/4900#), CD44 (CST, 3570#), α-Tubulin (CST, 3873#), GAPDH (CST, 2118#), Histon-H3 (CST, 4499#), FLAG (CST, 14793#), HA (CST, 3724#). Antibody against CD24 was from Abcam (ab123946).
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6

Western Blot Analysis of Macrophage Markers

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Total cell lysates were resolved on sodium dodecyl sulfate-polyacrylamide gel and electrotransferred onto polyvinylidene fluoride membranes. After blocking in 5% (w/v) dry milk in Tris-buffered saline with 0.1% Tween 20, the membranes were incubated with anti-CD68 (ab125212, Abcam, Cambridge, UK), anti-CD163 (ab182422, Abcam), anti-CD204 (ab123946, Abcam), anti-CD64 (PA5-24855, Thermo Fisher Scientific), anti-CD16 (MA1-19006, Thermo Fisher Scientific), or anti-β-actin (ab8227, Abcam) primary antibody at room temperature for one hour. After washing, the membranes were incubated with horseradish peroxidase-conjugated goat anti-rabbit antibody (ab205718, Abcam). Signals were detected using a BioSpectrum Imaging System (UVP LLC, Upland, CA, USA).
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