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8 protocols using cxcr1

1

Chemokine Receptor Flow Cytometry

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FITC-conjugated mouse antihuman CCR3, CCR4, CCR5, CCR6, CCR7, CCR9, CXCR1, CXCR3, CXCR4, and CXCR5 or unconjugated monoclonal mouse-antihuman CCR1, CCR2, and CXCR6, as well as PE-conjugated rat antihuman CCR8, PE-conjugated rat antihuman CCR10, and PE-conjugated rat IgG2b, were obtained from R&D Systems Europe Ltd. (Abingdon, UK). FITC-conjugated mouse antihuman CX3CR1 was purchased from Medical and Biological Laboratories Co. Ltd. (Nagoya, Japan). FITC-conjugated monoclonal mouse antihuman CD3, PE-conjugated monoclonal mouse antihuman CD56, and FITC-conjugated goat anti-mouse were purchased from Becton-Dickinson (San Diego, CA, USA). FITC-conjugated mouse IgG, PE-conjugated mouse IgG, unconjugated mouse IgG, and unconjugated rat IgG were obtained from either Becton-Dickinson or from R&D Systems. Pertussis toxin (PTX), MMF, and DMF were obtained from Sigma-Aldrich (Saint Louis, MO, USA). CCL1, CCL27, CCL28, and CXCL10 were purchased from PeproTech (London, UK).
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2

Phenotypic Characterization of Activated NK Cells

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Leukocytes were defined as CD45pos, and the different cell subtypes were defined as CD3pos (T cells), CD19pos (B cells) CD14pos (monocytes) and Cd56pos (NK cells). Cell viability was assessed by propidium iodide staining. Anti-isotype controls (Exbio, Praha, CZ) were performed.
1 × 105 eNK cells were labeled with fluorophore-conjugated antibodies: CD3-PE-Cy7, CD16-PE, CD56-APC, NKG2D-PE, NKG2C-PE, NKG2A-PE, NKp30-PE, NKp44-PE, NKp46-PE, KIR2DL2/3-PE, KIR2DL1-PE (BD, Italy), KIR2DL4-PE (R&D Systems, Italy); CXCR1, CXCR2, CXCR3, CX3CR1, CXCR4, CCR1, CCR2, CCR3, CCR5, and CCR7 (R&D Systems, Italy). eNK cells were gated as CD56pos CD3neg. eNK cells activation status was determined by CD107a staining (R&D Systems, Italy), as previously reported (Rizzo et al., 2016 (link)).
5 × 105 epithelial cells were stained specific Ab HLA-I (HLA-A,-B,-C)-PE (BD Biosciences, Italy), HLA-E (clone MEM-E/08, Exbio, Praha, CZ) or HLA-DR (BD Biosciences, Italy) and matched isotype controls.
The NKG2D-ligands were detected on epithelial cells by binding of NKG2D-Fc chimera (R&D Systems, Italy) and indirect labeling with the secondary Ab FITC-coupled mouse anti-human IgG1 (Abcam, Cambridge, United Kingdom).
Data were analyzed using FACS CantoII flow cytometer (BD, Milan, Italy) and FlowJo LLC analysis software (Ashland, OR, United States). Ten thousand events were acquired.
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3

Western Blot Analysis of Signaling Proteins

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The cellular proteins from cultured cells were extracted by lysing in lysis buffer (50 mM Tris-HCl pH 7.5, 125 mM NaCl, 5 mM EDTA and 0.1% Triton X-100) containing 1% protease inhibitor and 1% protein phosphatase inhibitor cocktail (Sigma-Aldrich). Western blot was performed following previously reported methods [11 (link)]. Briefly, proteins were electrophoresed in a 5–20% sodium dodecyl sulfate-polyacrylamide gradient gel. After electrophoresis, proteins were transferred to the PVDF membrane with an iBlot® Gel Transfer Stack (Invitrogen). The membrane was blocked using 5% skim milk and then incubated overnight at 4 °C with a primary antibody. After washing, the membrane was incubated with a secondary antibody for 90 min at 25 °C. Chemiluminescence was excited by ImmunoStar® Reagents (FUJIFILM Wako Pure Chemical) and captured by the ImageQuantTM LAS 4000 mini (FUJIFILM).
The primary antibodies used were phosphorylated (p)-Stat3 Tyr705 (#9145, Cell Signaling Technology; CST, Beverly, MA, USA), total (t)-Stat3 (#4904, CST), pAkt Ser473 (#4060, CST), tAkt (#9272, CST), pp38 MAPK (#4511, CST), tp38 MAPK (#8690, CST), CXCR1 (#MAB330, R&D Systems), CXCR2 (#ab65968, Abcam, Cambridge, UK), and β-actin (#4970, CST). The signal intensities of bands were quantified using the ImageJ 1.53t.
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4

Phenotypic Characterization of GMP-ASC

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GMP‐ASC alone and treated either with OA‐CM or OA‐SF were characterized by flow cytometry using the following markers CXCR1, CXCR3, CXCR4, CCR1, CCR2, CCR3, CCR5 (R&D), CXCR7 (Abcam, Cambridge, UK), and IL6R (GeneTex Inc., Irvine, CA).
In brief, after harvesting cells upon detachment, they were washed twice with phosphate‐buffered saline (PBS), centrifuged, and washed in a flow cytometry buffer (PBS supplemented with 2% bovine serum albumin [BSA] and 0.1% sodium azide).
Aliquots of 1 × 105 cells were then incubated with primary antibodies at 10 µg/ml 4 °C for 30 min, washed twice with a flow cytometry buffer, and incubated with polyclonal rabbit anti‐mouse and goat anti‐rabbit immunoglobulins/fluorescein isothiocyanate (FITC) conjugate (Dako Cytomation, Glostrup, Denmark) at 4 °C for 30 min. After two final washes, the cells were analyzed using a fluorescence‐activated cell sorting (FACS) CantoII Cytometer (Becton Dickinson). For isotype control, non‐specific mouse IgG was substituted for the primary antibody.
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5

Multicolor Flow Cytometry for Macrophage Polarization

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For the macrophage polarization analysis, a multicolour flow cytometry protocol with a sequential gating strategy was developed as previously described [15 (link)]. Cell suspensions were stained with antibodies specific for CCR7 (Miltenyi Biotec, Bergisch Gladbach, Germany), CD86 (BioLegend, Sen Diego, CA, USA), CXCR1 (R&D Systems, Minneapolis, MN, USA), and CCR2 (BioLegend), and the cells were then fixed and permeabilized with Cytofix–Cytoperm solution (BD Biosciences). In the PM-2 K+ cell population, cells that were CCR7+CD86+ were defined as M1-like macrophages, while those that were CCR7CXCR1+, CCR7CD86+, and CCR7CCR2+ were defined as M2a-, M2b-, and M2c-like macrophages, respectively [3 (link), 15 (link)]. The histograms with all the antibodies and gating strategies used in flow cytometry for the macrophage subsets are shown in Additional file 1.
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6

Multimarker Flow Cytometry Analysis

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The preparation of single‐cell suspensions was described previously (Fu et al., 2020 (link)). Antibodies specific for the following surface markers were used: Ly6G (1A8‐Ly6g), CD11b (M1/70), CD45 (30‐F11), CD205 (205yekta), and TLR2 (CB225) were purchased from eBioscience (San Diego, CA, USA); CCR3 (J073E5), CCR4 (2G12), CCR5 (HM‐CCR5), CCR6 (29‐2L17), CCR7 (4B12), CCR9 (CW‐1.2), CXCR2 (SA203G11), CXCR3 (CXCR3‐173), CXCR4 (L276F12), CXCR5 (L138D7), CXCR7 (8F11‐M16), and CX3CR1(SA011F11) were purchased from Biolegend (San Diego, CA, USA); CCR1 (R&D), CCR2 (R&D), CCR8 (1055C, R&D), CCR10 (R&D), CXCR1 (R&D), and CXCR6 (R&D) were purchased from R&D Systems (Minneapolis, MN, USA). All antibodies were used at the fold dilution described on the manufacturer's recommendation. Unstained cells, single stain, fluorescence minus one control, and isotype controls were used for setting laser voltages and for compensation. FCM data were obtained by FACSAria III (BD Biosciences, San Jose, CA, USA) and analyzed with FlowJo v. 10 (BD Biosciences, San Jose, CA, USA).
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7

FAK Inhibitor TAE226 Protocol

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The FAK inhibitor, TAE226, (Cat#HY-13203, Molecular formula: C 23 H 25 ClN 6 O 3 , molecular weight: 468.94) was purchased from Med Chem Express. The recombinant human chemokine IL-8 (Cat#208-IL-010/CF) was obtained from R&D systems. Phosphate-buffered saline (02-024-1ACS), RPMI1640 (Cat#01-100-1ACS) and HyClone (Cat#04-001-01ACS) were purchased from Biological Industries. Penicillin-streptomycin solution (FG101-01) and 0.25% trypsin (Cat#FG301-01) were purchased from Trans Gen Biotech. Fibronectin (ECM001) was purchased from Millipore. BSA (Cat#PC001) was purchased from Solarbio. CXCR1 (Cat#MAB330) and CXCR2 (Cat#MAB331) blocking antibodies were purchased from R&D systems. Anti-FAK (Cat#05-537) was purchased from Millipore. β-Actin (Cat# A5441) was purchased from Sigma. Anti-p-FAK (Tyr397) (Cat#700255) was purchased from Invitrogen. Goat anti-rabbit (Cat# ab136817) and goat anti-mouse (Cat# ab205719) were purchased from Abcam.
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8

Comprehensive Immunophenotyping of Cell Subsets

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The following monoclonal antibodies were purchased from BD Biosciences: 7-AAD, CCR7, CD3, CD4, CD16, CD14, CD19, CD25, CD34, CD45, CD56, CD69, CD94, CD117, CTLA4 and DAPI; from eBiosciences: CD62L and CD127; from R&D Systems: CCR5, CCR6, CXCR1, CXCR3, GITR, integrin β7 and LAP. Titrated amounts of 7AAD and DAPI were added to stained cells 10 minutes before acquisition. For Foxp3 intranuclear staining, cells were then fixed and permeabilized at room temperature for 15 minutes using the Foxp3 Fix/Perm Kit (eBioscience) and stained in permeabilization buffer with a directly labeled antibody to Foxp3 APC (PCH101; eBioscience) at room temperature for 45 minutes, prior to two washes with permeabilization buffer. The LSRFortessa and FACSCalibur (Becton Dickinson) cell analyzers were used to acquire data. FlowJo software (Tree Star) was used for data analysis.
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