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4 protocols using anti synaptopodin

1

Kidney Histopathology and Immunohistochemistry

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Mice were anesthetized using a zoletil-xylazine cocktail during perfusion with phosphate-buffered saline (PBS). Kidney was vertically dissected and fixed with 10% formalin. Kidney sections (3 μm in thickness) were stained with Periodic acid-Schiff (PAS) stain (Sigma). Kidney pathology was evaluated using a lupus nephritis classification system as described in a previous study (16 (link)). Immunohistochemistry was performed using a Vectastain ABC kit (Vector). Tissue sections were incubated with anti-nephrin (Progen), anti-synaptopodin (Abcam), anti-podocin (Abcam), or isotype control antibodies (Abcam) at 4°C overnight. Staining was developed using 3,3′-diaminobenzidine chromogen (Dako). Sections were counterstained with hematoxylin QS (Vector).
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2

Podocyte Protein Lysate Analysis

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Total protein lysate from NHP podocytes was prepared using RIPA buffer (PIERCE, Cat# 89900). Precast 4–12% gels were used for SDS-PAGE (Invitrogen, Cat# NP0322PK2) and transferred to cellulose membranes using Semi-dry system (BioRad, Cat# 170–3940). Membranes were blocked with 5% milk in TBST for at least 1 h at room temperature or overnight at 4 °C. Primary antibody was incubated for 1 h followed by dye-labeled secondary antibody for 45 min at room temperature. Membranes were then washed three times with TBST before imaging analysis using LI-COR system. Primary antibodies included anti-Adora2b (NHP) (LifeSpan Bioscience, Cat#LS-A680), anti-Adora2b (Rat) (Millipore, Cat#AB1589P), anti-Tubulin (Thermal Fisher, Cat#MA1-19401), anti-Gapdh(Santa Cruz, Cat#SC-25778) anti-Nephrin (Abcam, Cat#ab85379), anti-Synaptopodin (Abcam, Cat#101883), anti-WT-1 (Epitomics, Cat#AC-0115), anti-cleaved Caspase3 (Cell Signaling, Cat#9661S), anti-Caspase-3 (Cell Signaling, #9662), and anti-Actin (SCB, #SC-1616).
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3

Characterization of Podocyte Differentiation

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Cells were differentiated on glass coverslips for 10 days and fixed with 4% para-formaldehyde in PBS for 10 min at room temperature (RT). After washing three times with PBS, cells were incubated for 30 minutes in blocking buffer (PBS with 5% BSA, 1% Triton X-100). Cultures were stained with primary antibodies, anti-synaptopodin (Abcam ab224491) at a dilution of 1:75, anti-NPHS2 (podocin, Sigma P0372) at 1:500, anti-NPHS1 (nephrin, Abcam ab183099) at 1:75 and WT-1 (R&D Bio-techne, AF5729) at 1:100, and incubated at RT for 30 min. The secondary antibody Alexa Fluor 568 (Thermofisher; Goat: A-11056, Rabbit: A-10040) was incubated at a dilution of 1:250 for 1 h. Either F-actin or the nucleus was counter stained using phalloidin (ActinGreen 488, GeneCopoeia, Rockville, MD) or Hoechst 33342 respectively. Fluorescent images were processed using ImageJ.
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4

Quantifying Podocyturia: A Standardized Technique

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We have previously described the method to study podocyturia in detail [24 ]. Briefly, a mid-stream freshly voided urine sample was collected on-site after a minimum of 3 h without voiding; and 20 ml of urine were centrifuged at 700g for 5 min in a cytospin. The supernatant was discarded and the sediment was stored in 100 µl aliquots at room temperature mixed with a 1.5 ml solution of 40 % formaldehyde diluted in phosphate-buffered saline (PBS) (pH 7.2–7.4) to reach a final 10 % concentration. Podocyte nuclei were stained with 40,6-diamidino-2-phenylindole (DAPI). Podocytes were identified by immunofluorescence using anti-synaptopodin as the primary antibody (1:100, Abcam, Cambridge, MA, USA) and IgG anti-rabbit Alexa Fluor® 488 (1:100, Abcam, Cambridge, MA, USA) as the secondary antibody. Samples were analyzed employing an epifluorescent microscope. Following our standardized technique, podocytes were counted in 10 randomly chosen 20× fields and the average of the counted podocytes in the microscopy fields was considered as the final count for each subject. Results were corrected based on the urinary creatinine concentration of the initial urinary volume of 20 ml employed for podocyte counting [24 , 25 (link)].
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