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Probeon plus

Manufactured by Thermo Fisher Scientific
Sourced in United States

The ProbeOn Plus is a laboratory equipment product designed for DNA microarray analysis. It provides a platform for the immobilization and hybridization of DNA probes. The core function of the ProbeOn Plus is to enable the efficient and reliable attachment of DNA probes to a solid support, facilitating subsequent microarray experiments.

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8 protocols using probeon plus

1

Immunolabeling of Corn Stover Cell Wall

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Sections of embedded corn stover rind were placed on ProbeOn Plus (from Fisher Scientific, Pittsburgh, PA, United States) microscope slides and incubated in a 5% non-fat dry milk w/v phosphate-buffered saline (PBS), 0.1% Tween 20 (milk/PBST)-blocking solution for 30 min at 25°C. Primary probes—PentaHIS-CBM3 (40 μg/mL milk/PBST), rat α-pectin JIM5 (1:5 v/v milk/PBST dilution) (from Carbosource, Athens, GA, United States), and 4 min, 6-diamidino-2-phenylindole (DAPI, 10 μg/mL milk/PBST) (from Molecular Probes, Eugene, OR, United States)—were applied on sections for 1.5 h at 25°C and then rinsed three times with PBST. Secondary probes – α-PentaHIS: Alexa555 (against CBM3, 1:50 milk/PBST dilution) (Qiagen, Hilden, Germany) and goat α-rat IgM:Alexa488 (against JIM5, 1:200 milk/PBST dilution) (Molecular Probes, Eugene, OR, United States) were applied on sections for 1.5 h and then rinsed 3X with PBST. Sections were dried overnight at 4°C in the dark.
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2

Immunocytochemical Analysis of EpCAM-Positive Cells

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MACS-sorted EpCAM-positive cells were fixed in 4% paraformaldehyde, and cytospin preparations were conducted on “Probe-on-Plus” slides (Fisher Scientific, United States). Cells were blocked with 10% goat serum, and stained with mouse monoclonal anti-human EpCAM antibodies directly conjugated with FITC (Miltenyi Biotech, Germany), and co-stained with either anti-cytokeratin (CK) 8+18+19 or anti-c-Met (Abcam Inc., MA, United States) primary antibodies. Alexa 594 (Molecular Probes, United States) was used as the secondary antibody. Images were captured using a confocal laser scanning microscope (Leica, Germany, SP2 AOBS).
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3

Immunohistochemical Analysis of Normal and Tumor Tissues

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Immunohistochemistry was performed by routine methods as described previously [59 (link)]. Normal and tumor tissues were fixed by immersion in either 10% neutral buffered formalin or 95% EtOH/5% glacial acetic acid overnight, dehydrated through ethanol and embedded in paraffin. Blocks were sectioned at 5Φm and stained with hematoxylin and eosin or prepared for immunohistochemistry by mounting tissue sections on electrostatically charged slides (ProbeOn Plus, Fisher Scientific). Antibody sources are, insulin (guinea pig anti-insulin polyclonal antibody, DAKO Inc., Indiana) and β-catenin (BD Transduction Laboratories, Cat No. 610153, Mouse IgG1). Analysis of immunohistochemistry was done to determine the distinct localization pattern (nuclear, cytoplasmic and nucleocytoplasmic).
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4

Determining Estrous Stages in Female Mice

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Female mice were periodically assayed for their estrous stages specifically on the days of behavioral experiments, to understand if the female mice in different estrous stages have differential impact of the drug treatment response in general, and with reference to the depressive behavior. The lavage of exfoliates from the vaginal opening was collected with distilled water and left to dry on probe-on plus (Fisher) slides. The cells were then stained with cresyl violet for microscopic analysis (McLean et al., 2012 (link)). The stained sections were cover slipped and observed under bright field microscopy for morphological classification of the cells to determine stage of estrous. Based on the vaginal cell morphology, the mice were classified to be either of the four stages, namely estrous, pro-estrous, metestrous, and diestrous. These stages were decided based on cell types, cornified epithelial cells, nucleated squamous epithelial cells, and leucocytes including neutrophils (Fig. 6 ae).
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5

RNA In Situ Tissue Preparation

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Tissue for RNA in situs were prepared and sectioned according to the LCM protocol. Sections were floated on methanol and mounted on microscope slides (Fisherbrand Probe On Plus). Slides were heated on a slide warmer at 42 °C for overnight. Slides were de-paraffinized in xylene for 10 min twice, followed by a hydration series: 2 times of 100% ethanol, 95% ethanol, 70% ethanol, 50% ethanol, 30% ethanol, and 2 times of DEPC-treated water (2 min for each). Rehydrated slides were incubated in 0.2 M HCl for 10 min, and then washed in DEPC-treated water, 2 times of 2 × SSC (saline sodium citrate), then DEPC-treated water, 5 min each. Slides were then treated with a mixture of 100 mM Tris pH 8.0, 50 mM EDTA pH 8.0 and 1 μg/mL proteinase K at 37 °C for 20 min, followed by a wash in PBS (phosphate buffered saline) for 2 min. Slides were incubated in 2 mg/mL glycine in PBS for 2 min to block proteinase K, and washed in PBS for 30 s twice. Slides were fixed in 4% formaldehyde in PBS for 10 min and washed in PBS for 5 min twice, then dehydrated as follows: 2 times of DEPC-treated water, 30% ethanol, 50% ethanol, 70% ethanol, 95% ethanol and 2 times of 100% ethanol (2 min each). Slides were dried for 15 min in the fume hood.
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6

Immunohistochemical Analysis of Aged Rat Livers

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Livers from aged rats after multiple injections of hPD-MSC therapy were fixed in 10% neutral buffered formalin. After dehydration, fixed tissue was embedded in paraffin, sectioned into 8-μm-thick sections, and secured on slides (Pro-beOn Plus, Fisher Scientific, Pittsburgh, PA, USA). Tissue sections were deparaffinized, incubated with 3% H2O2 in methanol for 20 min, and treated with primary antibodies specific for PCNA (ab92552, Abcam, Cambridge, MA, USA) and Ki-67 (ab16667, Abcam, Cambridge, MA, USA) at a 1:100 dilution overnight at 4 °C. Next, sections were rinsed in PBS and treated with biotinylated secondary antibody (DAKO, Carpenteria, CA, USA) for 20 min at room temperature. Finally, the streptavidin-biotin-peroxidase complex was treated for 25 min at room temperature, and peroxidase activity was visualized with AEC+ staining (DAKO, Carpenteria, CA, USA). Negative control sections were incubated with dilution buffer alone. Hematoxylin was used for counterstaining.
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7

Quantifying Atherosclerosis and Glucose Sensitivity

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To quantify atherosclerosis, aortic roots were frozen in OCT, sectioned at 10 pm per section, and stained with Oil Red O as described before (Paigen et al. 1987 (link); Petriello et al. 2017 ). Briefly, serial sections were collected as close as possible to the emergence of the three valves, and sections were placed on microscope slides (Probe-on Plus; Fisher Scientific, Pittsburgh, PA) until the aortic valves disappeared. Frozen sections were lipid stained with Oil Red O, and images were taken using a Nikon Eclipse 55iUpright microscope attached to a 12 MP color camera. For the results shown in Suppl. Fig. 3, on average a mean of 6 serial sections per mouse were used for quantification. To quantify glucose sensitivity a gluocse tolerance test was performed at 5 and 12 weeks post initial PCB exposure. Mice were fasted for 6h (7am-1pm), and fasting blood glucose levels were measured with a hand-held glucometer (Accu-check Avivia, Roche,Basel, Switzerland) using 1-2μL of blood collected through the tail vein. Glucose was given via IP injection (2mg/g body weight, sterile saline) and blood glucose levels were measured at 15, 30, 60, 90, and 120 minutes post injection.
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8

Quantification of Aortic Atherosclerotic Lesions

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To quantify extent of atherosclerosis, aortic roots were frozen in OCT, sectioned at 10 μm per section, and stained with oil red O as before (Petriello et al., 2018 (link)). Briefly, serial sections were collected as close as possible to the observance of the three valves and sections were placed on microscope slides (Probe-on Plus; Fisher Scientific, Pittsburgh, PA) until the aortic valves disappeared. Frozen sections were stained with oil red O and images were taken using a Nikon Eclipse 55iUpright microscope attached to a 12 MP color camera. Subsequent images were quantified for lesion area by Image-Pro Software Plus 4.5.
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