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6 protocols using sirna targeting

1

Knockdown of HSP72 in CMECs

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The CMECs at 60% confluence in a 24-well plate were transfected with siRNA targeting HSP72 (Santa-Cruz Biotechnology, Santa-Cruz, CA, USA) or siRNA-scramble (siRNA-control) with Lipofectamine LTX Reagent (Invitrogen) and Opti-MEM TM (Invitrogen). To determine the knockdown efficiency, real-time PCR and immunoblotting analyses were performed to confirm the HSP72 downregulation at 3 days after transfection (Li et al., 2018c (link)).
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2

Investigating Cannabinoid Receptor Signaling

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CBD was bought from Biomol GmbH (Hamburg, Germany). JWH-133 and THC were bought from Bio-Techne GmbH (Wiesbaden, Germany) and Lipomed GmbH (Herne, Germany), respectively. R(+)-methanandamide, capsazepine and NAC were obtained from Sigma-Aldrich (Taufkirchen, Germany). AM251 and AM630 were obtained from Biozol (Eching, Germany). O-1602 and O-1918 were purchased from Tocris Bioscience (Bristol, UK) and Cayman Chemicals (Ann Arbor, Michigan, USA), respectively. SnPPIX was obtained from Enzo Life Sciences (Lörrach, Germany). The transfection reagent Lipofectamine™ RNAiMAX, OptiMEM and hPDGF-BB were purchased from Thermo Fisher Scientific Inc. (Schwerte, Germany). siRNA targeting HO-1 was purchased from Santa Cruz Biotechnology (Heidelberg, Germany; sc-35554). Negative control siRNA was from Qiagen (Hilden, Germany; cat. no. 1022076). Accutase cell detachment solution was obtained from Merck Chemicals GmbH (Darmstadt, Germany).
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3

Ectopic Protein Expression Plasmids

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The plasmids used for ectopic expression of TET1 and HIF1α were established by inserting the full-length cDNA into pRetroX-tight and pCDNA3.1 vectors, respectively. HRE luciferase reporter plasmid was established based on pGL3-promotor vector (Promega) as described previously [60 (link)]. CK2B luciferase reporter plasmid was established by inserting its sequence from +14 to −1525 into pGL3-basic (Promega). pCI-K48-Ub-6×His plasmid was kindly provided by Prof. Wuhan Xiao (Chinese Academy of Sciences, Hubei, China), and used for in vitro protein ubiquitination assay. siRNA targeting HIF1α and control siRNA were purchased from Santa Cruz. Cells were transfected with the above plasmids and siRNAs following a standard protocol with Lipofectamine 3000 (Thermo Fisher Scientific, USA).
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4

Transfection of Cells with siRNA and Plasmids

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Cells were transfected with control siRNA (Dharmacon) and siRNA targeting AKT1/2 (cat#.sc-43609, Santa Cruz) using Lipofectamine 3000 according to the manufacturer’s protocol. Transient DNA plasmid transfections also used Lipofectamine 3000. Detailed information on plasmid DNA, siRNA, and chemicals is listed in Supplementary Table.
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5

siRNA-Mediated SIRT3 Silencing

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siRNA targeting SIRT3 was purchased from Santa Cruz Biotechnology. Scrambled non-targeting siRNA was used as a control. Transfection of siRNA was performed according to the manufacturer’s protocol. Briefly, cells in exponential growth phase were plated in six-well tissue culture plates at 1 × 105 cells per well, grown for 24 h, and then transfected with siRNA using OligofectamineTM and Opti- MEMTM (Thermo-Fisher Scientific, USA) reduced serum medium.
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6

Silencing UCH-L1 Expression Using siRNA and shRNA

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siRNA targeting UCH-L1 was purchased from Santa Cruz Biotechnology. Transfection of siRNA was carried out according to the manufacturer's protocol. Briefly, cells in exponential phase of growth were plated in six-well tissue culture plates at 1x 105 cells per well, grown for 24 h, and then transfected with siRNA using lipofectamine RNAimax reagent and OPTI-MEM I-reduced serum medium. To stably silence UCH-L1 expression, the UCH-L1-targeted shRNA lentiviral particles (GENE) were transduced into cells, and the cells stably expressing the shRNA were then selected with 1 μg/mL of puromycin for 7 days. Transfection of the plasmid was carried out using lipofectamine 2000 (Invitrogen) reagent according to the manufacturer's protocol.
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