The largest database of trusted experimental protocols

5 protocols using mini extruder kit

1

Liposome Preparation for Lipid Binding

Check if the same lab product or an alternative is used in the 5 most similar protocols
All lipids were purchased from Avanti Polar Lipids. LUVs were prepared using a Mini extruder kit (Avanti Polar Lipids). The LUVs were comprised of molar ratios of 35% phosphatidylcholine (PC), 22.5% phosphatidylethanolamine (PE), 15% phosphatidylserine (PS), 15% phosphatidylinositol 4,5-bisphosphate (PIP2), 7.5% cholesterol, and 5% 1,2-dioleoyl-sn-glycero-3-[(N-(5-amino-1-carboxypentyl) iminodiacetic acid) succinyl]; DGS-NTA(Ni). The lipids were mixed and then dried under a stream of nitrogen gas. The dried lipid film was hydrated with hydration buffer (either 25 mM Hepes, 100 mM NaCl, pH7.4 for the enzymatic assay or 25 mM Hepes, 20 mM NaCl, 200 mM sucrose, pH7.4 for the lipid binding assay) and then subject to five freeze/thaw cycles. The hydrated lipid suspension was then extruded ten times through a 0.4 μm pore filter (Avanti Polar Lipids.) The size and shape of LUVs were confirmed by electron microscopy (Fig. S1B).
+ Open protocol
+ Expand
2

Activation of OT1 T Cells with pMHC Monomers

Check if the same lab product or an alternative is used in the 5 most similar protocols
To activate OT1 T cells with pMHC monomers, 8-well coverglass chamber slides (Nunc LabTek II Chambered #1.5, Thermo Scientific, Waltham, MA) were incubated sequentially for one hour each with 1 mg/ml BSA-biotin, 1 mg/ml streptavidin (SA), and 10 μg/ml pMHCs plus 5 μg/ml mouse recombinant CD80 (Sino Biological, Beijing, China). Three wash steps were performed between each addition. Activation of OT1 T cells on glass-supported planar lipid-bilayer was performed as described previously [45 (link),50 ]. In brief, biotin-CAP-PE and DGS-Ni were passed through a mini-extruder kit (Avanti Polar Lipids, Alabaster, AL) to generate liposomes, which were then mixed and added to a flow chamber formed between a clean glass slide and a cover slip. Following a one hour incubation at RT, the chamber was blocked using 5% w/v casein in 1X PBS. Finally, the flow chamber was incubated with 1 mg/ml SA, 10 μg/ml pMHCs, and 10 μg/ml recombinant mouse His-ICAM-1.
+ Open protocol
+ Expand
3

Lipid Bilayer Membrane Synthesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Triton X-100, Calcein, cholesterol (CH), eosin Y, ergosterol, hematoxylin, hexamethyldisilazane (HMDS), and XTT were purchased from Sigma-Aldrich Co. (St. Louis, MO, USA). PE (from the brain), PC (from eggs), sphingomyelin (SM, from egg), PI (from bovine liver), and a mini-extruder kit were from Avanti Polar Lipids (Alabaster, AL, USA). Ethyl cyanohydroxyiminoacetate (oxyma) and 9‑fluorenylmethoxycarbonyl (Fmoc) amino acids were obtained from CEM Co. (Matthews, NC, USA) N,N′-diisopropylcarbodiimide (DIC) was acquired from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). SYTOX Green, 5/6-carboxy-tetramethyl-rhodamine succinimidyl ester (NHS-rhodamine), and MitoSOX Red were purchased from Molecular Probes (Eugene, OR, USA). All other reagents were of analytical grade.
+ Open protocol
+ Expand
4

Preparation of Biotinylated Lipid SUVs

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lipid mixture of 49.9% DOPE (1,2-dioleoyl-sn-glycero-3-phosphoethanolamine), 49.9% DOPC (1, 2-dioleoyl-sn-glycero-3-phosphocholin) and 0.1% PE-biotin (1,2-dioleoyl-sn-glycero-3-phosphoethanolamine-N-biotinyl) was prepared at 10 mg/mL in chloroform and stored at −20 °C. For SUV preparation, 1 mL of the lipid mixture was transferred to a round-bottom glass tube and the mixture was dried under nitrogen gas for 20 min. The lipids were dissolved in 1 mL extrusion buffer (5 mM Tris-HCl, pH 7.5, 40 mM NaCl, 10 mM MgCl2) and the suspension was vortexed for 5 min, followed by sonication for 10 min. The suspension was then extruded using a Mini Extruder Kit (Avanti Polar Lipids). The suspension was passed through a 100 nm membrane 41 times to produce a clear suspension of SUVs.
+ Open protocol
+ Expand
5

PLGA Nanoparticle Synthesis and Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Poly (lactic-co-glycolic acid) (PLGA), (LG 50:50, (Mn 25,000–35,000 Da)), was purchased from Akina Inc (West Lafayette, IN). Polyvinyl alcohol (PVA, MW 15,000–25,000), NHS, bovine serum albumin (BSA), Dulbecco’s Modified Eagle’s Medium (DMEM), Iscove’s Modified Dulbecco’s Medium (IMDM), dimethyl formamide (DMF), paraformaldehyde, Protease inhibitor cocktail,1-ethyl-3-(3-dimethylaminopropyl)-carbodiimide (EDC) and Triton R X-100 were obtained from Sigma-Aldrich (St. Louis, MO), and dichloromethane from Merck (Kenilworth, NJ). Cisplatin was received from Cayman Chemicals (Ann Arbor, MI). SDS-PAGE gel, and Mini PVDF transfer packs were bought from Bio-Rad (Hercules, CA). The Mini Extruder Kit was acquired from Avanti Polar Lipids (Alabaster, AL). Formvar-coated copper TEM grids were obtained from Electron Microscopy Sciences (Hatfield, PA). Fetal bovine serum (FBS), 1X trypsin-EDTA, and penicillin-streptomycin were ordered from Invitrogen (Waltham, MA). Other chemicals, if not specified, were obtained from Sigma-Aldrich (St. Louis, MO). All reagents were of analytical grade.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!