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9 protocols using anti β actin antibody ac 74

1

Analyzing Neurodegenerative Disease Mechanisms

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Spermidine, ouabain, SCH28080, FITC-dextran, retinoic acid, brain-derived neurotrophic factor (BDNF), and anti-β-actin antibody (AC-74) were obtained from Sigma-Aldrich. Thapsigargin was from Cayman Chemical. Anti-Xpress-tag antibody and lipofectamine 3000 were from Thermo Fisher Scientific. Anti-Na+,K+-ATPase α1-isoform antibody (C464.6) was from Santa Cruz Technology. Anti-phosphorylated α-synuclein antibody (pSyn#64), bafilomycin A1, omeprazole, valinomycin, and G-418 were from Fujifilm Wako. Anti-ATP13A2, anti-Lamp2, anti-calnexin, and anti-clathrin heavy chain antibodies were from Cell Signaling Technology. Anti-H+,K+-ATPase α-subunit (1H9) and β-subunit (2B6) antibodies were from Medical & Biological Laboratories. Horse-radish peroxidase-conjugated anti-mouse and rabbit IgGs were from Millipore. Anti-pan-α-synuclein antibody (MJFR1) was from Abcam. Alexa Fluor 568- and 488-conjugated IgG antibodies were from Abcam. 4’,6-Diamidino-2-phenylindole (DAPI) was from Dojindo Laboratories. Saponin was from Nakarai Chemicals. Fetal bovine serum (FBS) was from Nichirei bioscience. Western Lightning ECL Pro and [γ-32P] ATP were from PerkinElmer. 86RbCl was from Polatom. All other reagents were of molecular biology grade or the highest grade of purity available.
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2

Western Blot Analysis of Protein Targets

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For western blotting, cell lysate was prepared with RIPA buffer containing NaCl 150 mM, Tris-HCl (pH 8.0) 50 mM, 1% Triton X-100, 0.5% Na deoxycholate, 0.1% SDS, EDTA 1 mM, EGTA 1 mM, Na3VO4 1 mM, β-glycerophosphate 1 mM, and the protease inhibitor cocktail from Roche Applied Sciences for 5 min on ice, followed by centrifugation at 12,000× g for 5 min at 4 °C to remove debris. The transferred nitrocellulose membrane was pre-incubated with 5% BSA in PBS+0.05% Tween 20 (PBST) for 30 min and then incubated with anti-β-actin antibody (AC-74, Sigma-Aldrich) at 1:2000, anti-iNOS antibody (Cat# 15323, Abcam, Cambridge, UK) at 1:1000, anti-FAAH antibody (Cat# 54615, Abcam) at 1:1000, or anti-COX-2 antibody (Cat# 160106, Cayman Chemical) at 1:500 in PBST at 4 °C overnight. The membrane was reacted with a secondary antibody conjugated with horse radish peroxidase (Bio-Rad) at 1:2500 for 1.5 h, followed by visualization with ECL reagent (Thermo Scientific), using an imaging system (ChemiDoc, Bio-Rad) with chemiluminescent mode. Band intensity was quantified with NIH ImageJ software.
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3

Protein Expression Analysis by Western Blot

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Cell pellets were lysed in RIPA buffer (1.0% NP‐40, 50 mmol/L Tris‐HCl [pH 8.0], 150 mmol/L NaCl, 0.5% deoxycholate, 0.1% SDS, and 1 mmol/L phenylmethylsulfonyl fluoride) containing 1× protease inhibitor cocktail and 1× phosphatase inhibitor cocktail (Nacalai Tesque, Kyoto, Japan), and was denatured by adding 1× SDS sample buffer (62.5 mmol/L Tris‐HCl [pH 6.8], 2.5% SDS, 0.002% bromophenol blue, 5% β‐mercaptoethanol, and 10% glycerol). Protein concentration was determined by performing Bradford XL assay (Bio‐Rad, Hercules, CA, USA), and samples containing equal amount of proteins (10 μg/lane) were resolved by performing SDS‐PAGE. Protein bands were detected using ImageQuant LAS 4000 Mini (GE Healthcare, Chicago, Il, USA), and imaging data were quantified using ImageJ software (NIH). The following antibodies were used for western blotting: anti‐MTH1 rabbit polyclonal antibody, which was prepared as described previously 19, 24, and anti‐β‐actin antibody (AC‐74; Sigma‐Aldrich, St. Louis, MO, USA).
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4

Osteoclastogenesis Signaling Pathway

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Recombinant M-CSF and RANKL were purchased from PeproTech. Recombinant mouse S100A4 was purchased from Prospec. Recombinant OPG was purchased from R&D Systems. Antibodies against vimentin and c-Fos were purchased from Santa Cruz. Antibodies against N-cadherin and snail2 were obtained from Cell Signaling Technology. Antibodies for RAGE (DD/A11) were from Millipore. Anti-S100A4 antibody was purchased from Abcam. Anti-β-catenin antibody was purchased from Invitrogen. Antibodies for NFATc1 (7A6), E-cadherin, and hHLA were purchased from BD Pharmingen. Anti-β-actin antibody (AC-74) and the leukocyte acid phosphatase kit (for TRAP staining) were purchased from Sigma-Aldrich. Lipofectamine for siRNA transfection was purchased from Life Technologies. siRNA oligonucleotides and shRNA lentiviral particles were purchased from Santa Cruz. Dentin slices were purchased from Immunodiagnostic Systems.
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5

Analysis of β-Actin Protein in Mouse Mammary Tissue

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Protein sample from cultured mouse mammary tissue was prepared by homogenization in whole tissue extract buffer and then diluted by the same volume of 2×SDS sample buffer [37 ]. Equal amounts of protein (20 μg/lane) were resolved by SDS polyacrylamide gel (10%) electrophoresis and transferred to Immobilon-P nylon membrane (Millipore Co.). The membrane was blocked in Tris-buffered saline and Tween 20 (TBST: 10 mM Tris, pH 7.5; 150 mM NaCl; and 0.05% Tween 20), containing 5% (w/v) nonfat Carnation instant milk (Nestle, Solon, OH). Blot was incubated with primary antibody (1 : 10,000 of anti-β-actin antibody, AC74, Sigma-Aldrich Chemical Co., St. Louis, MO, USA) overnight at 4°C. After washing in TBST, it was incubated with horseradish peroxidase- (HRP-) conjugated secondary antibody (1 : 5000 of donkey anti-mouse IgG, Sigma-Aldrich Chemical Co.) for 1 hour at room temperature. Then, it was visualized by using enhanced chemiluminescence Western blotting detection reagents (Amersham Pharmacia Biotech, Newark, NJ, USA) and appropriate exposure to X-ray film (Kodak, Rochester, NY, USA). Specific bands were quantified by densitometric analyses using a GelPro analyzer (Media Cybernetics, Bethesda, MD, USA).
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6

Western Blot Analysis of Apoptosis Markers

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Res2‐Igrov1 cells were grown to 80–90% subconfluency, trypsinized, and lysed in RIPA Lysis Buffer (Santa Cruz, Dallas, TX, USA). Subsequently, 20 µg whole cell lysate (per sample) was subjected to a NuPAGE 4–12% Bis‐Tris protein gel and transferred onto nitrocellulose (NC) membranes (Amersham™ Protran™ Premium 0.45 µm NC; GE Healthcare Life science, Chalfont St Giles, UK). Subsequently, (dissected) NC membranes were incubated with anti‐β‐actin antibody (AC‐74; Sigma‐Aldrich, Taufkirchen, Germany, 1 : 106), anti‐cleaved PARP (Asp214) antibody (D64E10; Cell Signaling Technology, 1 : 250), or primary rabbit anti‐phospho‐γ‐H2AX antibody (#2577; Cell Signaling Technology, 1 : 250). Subsequently, membranes were incubated for detection with secondary antibodies, raised against rabbit and linked with HRP (#7074; Cell Signaling Technology) or raised against mouse and linked with HRP (order# 115‐035‐003; Dianova, Hamburg, Germany). Detection was performed with ECL Plus Western Blotting Detection reagent (GE Healthcare, order# RPN2232).
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7

Antibody Characterization for Immunoassays

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Anti clathrin heavy chain antibody (BF-06, Thermo Scientific Pierce, Rockford, IL) was used as the primary antibody in immunofluorescence assays. Mouse monoclonal antibodies to gB (2F12), pUL44 (ICP36), and IE1 (CH160) were purchased from Virusys corporation, Sykesville, MD, USA. Fluorescent label tagged secondary antibody DYLIGHT 594 was purchased from Thermo Scientific Pierce and used in immunofluorescent assays (IFA) described below. Hoechst 33258 (Thermo Scientific Pierce) staining identified the nuclei in IFA. Anti β-actin antibody (AC-74, Sigma-Aldrich, St Louis, Mo, USA) was used as a control for sample loading in immunoblots. Peroxidase-labeled horse anti-mouse IgG (Vector Laboratories, Burlingame, CA) was used as the secondary antibody for IBs. Blots were detected using ECL Western blotting detection reagents (GE Healthcare, Buckinghamshire, United Kingdom).
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8

Antibody Detection and Validation

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Anti-human CD133 antibody (W6B3C1, 293C3) and mouse IgG were purchased from Miltenyi Biotec, anti-β-actin antibody (AC-74) was from Sigma Aldrich. Antibodies against cleaved Notch1 (Val1744) and CD133 (C24B9) were purchased from Cell Signaling Technology and anti-V5 antibody was from Bethyl Laboratories. Doxycycline (Dox) was from Clontech and G418 was from Roche Diagnostics.
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9

Shh Pathway Regulation by Autophagy

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Recombinant Shh was synthesized, purified, and tested as previously described. KAAD-cyclopamine was purchased from EMD Millipore (Billerica, MA). Bafilomycin A1, chloroquine, doxycycline, and anti-β-actin antibody (AC-74) were from Sigma-Aldrich (St. Louis, MO). Antibodies targeting HA(C29F4), myc (9B111), ATG101, p62, LC3B, FIP200, ULK1, phospho-ULK1(Ser757), ATG13, and GLI1 (L42B10) were from Cell Signaling Technology (Danvers, MA). Secondary anti-rabbit-HRP and anti-mouse-HRP antibodies were purchased from BioRad (Hercules, CA). Anti-GFP, secondary anti-rabbit-HRP and anti-mouse-HRP Alexa 488 and Alexa 568 antibodies were from Invitrogen (Waltham, MA).
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