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11 protocols using gapdh 60004 1 1g

1

Wnt10b Protein Expression Analysis

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In order to examine whether HUCMSCsWnt10b could activate overexpression of Wnt10b protein and Wnt signalling pathway, total protein was extracted and its concentration was determined by the BCA assay. Next, proteins were subjected to electrophoresis under reducing conditions and blotted onto a polyvinylidene difluoride membrane. Membranes were then incubated with primary antibody (1:100): anti-Wnt10b antibody (ab66721, abcam), anti-β-catenin antibody (610153, B&D) and GAPDH (60004-1-1g, proteintech). Secondary antibody in TBST was diluted with 5% milk and incubated with membranes for 40–60 min at room temperature with agitation. Signals were detected with ECL using an electrochemiluminescence kit.
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2

Extracellular Vesicle Protein Analysis

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Protein was isolated using RIPA lysis buffer (JRDUN, Shanghai, P.R. China), concentration-measured by an enhanced BCA protein assay kit (Thermo Fisher Scientific), separated by 10% SDS-PAGE, and immunoblotted to PVDF membranes (Millipore, Billerica, MA, USA), blocked with 5% nonfat dry milk for 1 h at room temperature, and probed with primary antibodies at 4°C overnight. After washing with PBST, the bolts were incubated with a second antibody for 1 h at 37°C. An enhanced chemiluminescence system (Tanon, Shanghai, P.R. China) was used to visualize protein. Primary antibodies’ information was provided as follows: CD9 (Ab92726, Abcam, St. Louis, MO, USA), CD81 (Ab109201, Abcam), ATG14 (Ab227849, Abcam), and GAPDH (60004-1-1G, Proteintech, UK).
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3

Immunoblotting for Extracellular Vesicle Markers

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Briefly, total protein (25 μg) was fractionated on SDS-PAGE gels and subsequently electroblotted to PVDF membranes. The membranes were incubated with primary antibodies overnight (4°C), followed by anti-mouse secondary antibody IgG (Beyotime, Shanghai, China) for 1 h at 37°C. All primary antibodies used in this study were provided as follows: CD9 (Ab92726, Abcam, UK), CD63 (Ab134045, Abcam, UK), RGS2 (Ab36561, Abcam, UK), and GAPDH (60004-1-1G, Proteintech, USA). The experiment was conducted in triplicate.
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4

Antibody Characterization for Helicase Enzymes

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The antibodies used in this study were as follows: USP28 (17707-1-AP, 1:1000 WB, Proteintech); RECQL1 (A300-450A, 1:1000 WB, Bethyl Lab, Montgomery); WRN (4666S,1:1000 WB,Cell Signaling); BLM (A300-110A,1:1000 WB, Bethyl Lab); RECQL4 (17008-1-AP,1:1000 WB, Proteintech); RECQL5 (A302-520A, 1:2000 WB, Bethyl Lab); Flag (F3165, 1:2000, Sigma); Ub (SC-8017, 1:200 WB, Santa Cruz Biotechnology); γH2AX (05-636, 1:500 IF, Millipore); Claspin (2800S, 1:1000 WB, Cell Signaling); c-MYC (SC-40, 1:200 WB, Santa Cruz); Phospho-Chk1-Ser345 (2348, 1:1000 WB, Cell Signaling); CHK1 (ab32531, 1:1000 WB, Abcam); GAPDH (60004-1-1g, 1:5000 WB, Proteintech); Tubulin (66240-1-1g, 1:5000 WB, Proteintech); ACTIN (66009-1-1g, 1:3000 WB, Proteintech). The secondary antibodies conjugated to horseradish peroxidase for Western blot and the secondary antibodies anti-mouse, -goat or -rabbit Alexa fluor 488 or 594 for immunofluorescence staining were purchased from Jackson ImmunoResearch Laboratories. siRNAs were synthesized by GenePharma.
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5

Western Blot Analysis of GPX4 and GAPDH

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Total protein lysates were prepared using radioimmunoprecipitation assay (RIPA) buffer containing proteinase inhibitor (Beyotime, Shanghai, China). Proteins were separated on sodium dodecyl sulphate-polyacrylamide (SDS-PAGE) gels and transferred onto nitrocellulose membranes (Millipore, Billerica, MA). After blocking with 5% non-fat milk, membranes were incubated with primary antibodies at 4 °C for overnight. Subsequent to washing, membranes were incubated with anti-rabbit IgG HRP-conjugated secondary antibody (A0208, Beyotime, Shanghai, China) at room temperature for 1 h. Enhanced chemiluminescence (ECL) system (MilliporeSigma, Burlington, MA) was used for signal detection. Antibodies used were GPX4 (Ab125066, Abcam, Cambridge, UK), GAPDH (60004-1-1G, Proteintech, Wuhan, China).
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6

Western Blot Analysis of Protein Expression

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Proteins (20–50 µg) were boiled for 5 min in SDS sample buffer (62.5 mM Tris (pH 6.7), 1.25% SDS, 12.5% glycerol, and 2.5% β-mercaptoethanol). Proteins isolated from the cells and HR Pre-Stained Protein Marker 10–170 kDa (BIOTOOLS, New Taipei City, Taiwan) were loaded onto SDS gels and subjected to electrophoresis. After transfer to a PVDF membrane, the proteins on the membrane were incubated with antibodies against Beclin 1 (3738, Cell signaling, Beverly, MA, USA), LC3 (4108, Cell signaling), collagen 1 (14695-1-AP, Proteintech, Rosemont IL, USA), CTGF (23936-1-AP, Proteintech), PAI-1 (11907, Cell signaling) and GAPDH (60004-1-1 g, Proteintech). Immunoreactive bands were visualized using an enhanced chemiluminescence system (Amersham, Little Chalfont, United Kingdom). Protein expression was quantified by ImageQuant version 5.1 (GE Healthcare, Waukesha, WI, USA).
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7

FBXO2 Regulation and Protein Levels

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The following antibodies were used in this study: FBXO2 (sc-398111, Santa Cruz), EBNA1 (ab81581, Abcam), Zta (sc-53904, Santa Cruz), β-tubulin (sc-23948, Santa Cruz), Myc (sc-40, Santa Cruz), GAPDH (60004-1-1g, Protein-tech) and FLAG (F3165, Sigma). MG132, bafilomycin A1 and tunicamycin were purchased from Selleckchem, LLC. siRNAs were synthesized by Guangzhou RiboBio Co., Ltd. The siRNAs were 21 base pairs long, and the sequences were as follows: control siRNA: UUCAAUAAAUUCUUGAGGUdTdT; FBXO2 siRNAs: #1: GAUGAGAGCGUCAAGAAGUdTdT; #2: CAGUUCUACUUCCUGAGCAdTdT; #3: AAGGUAGAUAGGCCUUAACdTdT. Lipofectamine RNAiMAX (Invitrogen) was used for siRNA transfection.
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8

Western Blot Analysis of Exosomal Proteins

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Protein concentrations were initially measured using the BCA method (Thermo Fisher Scientific). Thereafter, total protein (25 μg/well) was fractionated on 10% sodium dodecyl sulphate–polyacrylamide gel electrophoresis and transferred overnight to nitrocellulose membranes (Millipore, Billerica, MA, USA), which were then incubated sequentially with 5% nonfat dry milk at room temperature for 1 hr, primary antibodies at 4°C overnight, and then secondary antibody anti-mouse IgG (1 : 1,000; Beyotime, Shanghai, P.R. China) at 37°C for 1 hr. An enhanced chemiluminescence system (Tanon, Shanghai, P.R. China) was used to determine the protein levels. The primary antibodies used included the following: PCSK6 (Ab151562, Abcam, UK), CD63 (25682-1-AP, Proteintech, USA), CD81 (66866-1-Ig, Proteintech, USA), and GAPDH (60004-1-1 G, Proteintech, USA).
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9

TRIM14 Regulation in Cell Signaling

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Total protein of samples was extracted using RIPA lysis buffer (Beyotime, China). The protein was fractionated on SDS-PAGE and transferred to nitrocellulose membrane (Millipore, USA). The primary antibody was applied at 4 ℃ overnight. The protein was detected by ECL after the application of secondary antibody. All primary antibodies used in this study were list as follows: TRIM14 (15742-1-AP, Proteintech, USA); Cleaved-caspase3 (Ab2302, Abcam, UK); AKT (46191, CST, USA); p-AKT (4060, CST, USA); CD9 (Ab92726, Abcam, UK); CD63 (Ab271286, Abcam, UK); CD81(Ab109201, Abcam, UK); GAPDH (60004-1-1G, Proteintech, USA). Three replications were needed for each samples and three independent experiments for each reaction Cell transfection.
To knockdown the expression of TRIM14, three short interfering RNAs (siRNAs) were generated (Major, China) and constructed into lentiviral plasmids. A negative control siRNA (siNC) was used as the control group. The sequence of three siRNAs were as follows: siTRIM14-1: 5’- GCAGCACATTGACAACATA -3’; siTRIM14-2, 5’- GCCCGTCAAGAGCTTCTTT-3’; siTRIM14-3 5’- GCGATCGCTATTGCTGAAA-3’. For overexpression, a lentiviral plasmid containing TRIM14 cDNA was generated with a mock plasmid as a negative control (oeNC). Lipofectamine 2000 (Invitrogen, USA) facilitated the cell transfection.
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10

Protein Expression Analysis in Heart Tissue

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Heart tissue samples or cultured cells were homogenized in lysis buffer containing proteinase and a phosphatase inhibitor cocktail. The protein concentration was determined with a BCA protein assay kit (Bio-Rad). Nr4a3 (H7833, R&D), Caspase-3 (#9662, CST), Cleaved-caspase3 (#9661, CST), Bnip3 (#3769, CST) were detected with speci c antibodies. Histone-H3 (4499, CST) was used as a nuclear protein control, VDAC (#4866, CST) was used as a mitochondrial protein control, GAPDH (60004-1-1g, Proteintech) and α-tubulin (T9026, Sigma) levels were used as total protein internal controls.
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