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Chondroitin sulfate sodium salt

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Chondroitin sulfate sodium salt is a type of glycosaminoglycan that is naturally found in the cartilage and other connective tissues of the body. It is a commonly used laboratory reagent for various research applications.

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12 protocols using chondroitin sulfate sodium salt

1

Removal of K10-PEG5K for 18S rRNA Analysis

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Removal was performed using Chondroitin sulfate sodium salt (Cat# C4384, Sigma), in an excess amount of 100 × the number of amines, while adjusting the final Mg2+ concentration to 12 mM as described by Ponnuswamy et al. [24 (link)]. The sample was incubated at 37 °C over 2 h. Removal of the K10-PEG5K allows standard pattern migration of 18S rRNA:DNA in agarose gel for further analysis (Additional file 1: Note S7).
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2

Quantifying Urinary Glycosaminoglycans by CE

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Total sulfated GAGs was measured by dye binding assay [14 (link)]. Capillary electrophoresis (CE) was used to measure urinary CS, HS and HA. In brief, urine treated with chondroitin ABC overnight contained in 50 μm-diameter fused-silica capillary tube with 50 mM monosodium phosphate (NaH2PO4) and butylamine buffer under -15 kV reversed-polar mode was measured at 195 nm light absorption. [15 (link)] Chondroitin sulfate sodium salt (Sigma-Aldrich) heparan sulfate sodium salt and sodium hyaluronate (Cockscomb, TCI Europe N.V) were used as standards.
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3

Enzymatic Activity Assays for Glycosaminoglycans

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The following reagents 4-methylumbelliferyl acetate, 4-methyllumbelliferyl-α-D galactopyranoside, N-acetil-D-galactosamine, 4-methyllumbelliferyl-β-D-glucopyranoside, taurodeoxycholate hydrate, acarbose, 4-methyllumbelliferyl-α-D-glucopyranoside, 4-methylumbelliferylβ-D-N,N’,N’’triacetylchitotrioside, ethylenediamine dihydrochloride, formic acid, chondroitin sulfate sodium salt from shark cartilage, 1,9-dimethyl-methylene blue zinc chloride double salt, sodium hydroxide (NaOH) were purchased from Sigma-Aldrich (St. Louis, MO, USA). 4-methyllumbelliferyl sulfate potassium and 4-methyllumbelliferyl α-L-iduronide were purchased from Glycosynth (Warrington, UK). Sodium acetate, sodium citrate, sodium phosphate, and aminoacetic acid (glycine) were purchased from Synth (São Paulo, Brazil).
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4

Polyplex Heparin/Chondroitin Sulfate Binding

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VIPER or bPEI polyplexes were formulated with pLuciferase at N/P 10 and incubated in the presence of various concentrations of heparin sulfate or chondroitin sulfate sodium salt (Sigma) for 30 min at 37 °C. Samples were then loaded onto a 0.5% agarose gel containing TAE buffer (40 μmM tris-acetate, 1 mM EDTA) and 0.5 μg/mL ethidium bromide, and were electrophoresed at 110 V for 30 min before imaging on a UV transilluminator.
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5

Fabrication of Chondroitin Sulfate μRBs

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Gelatin (GEL) μRBs were fabricated as previously reported.13 (link),24 (link) To fabricate chondroitin sulfate (CS) μRBs, chondroitin sulfate sodium salt (from bovine cartilage, Sigma-Aldrich) was functionalized with acrylamide and 2.5 mM CRGDS. CS solution (7.5% (w/v)) was spun into a stirring bath of 2-propanol and internally crosslinked with dithiolretinol to fix the μRB shape.
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6

Quantifying Glycosaminoglycans and Collagen in Cartilage Samples

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NM and DM samples were weighed, freeze-dried and weighed again. The weights before and after freeze-drying were recorded to evaluate water content. GAG content was determined using a modified dimethylmethylene blue (DMMB) method as previously described (Farndale et al., 1986 (link)). NM and DM samples were lyophilised to a constant weight and then digested at 60°C in papain buffer (125 mg/mL papain, 5 mM cysteine/HCl, 5 mM disodium EDTA in PBS) for 12 h. The absorbance values of the samples were determined at 525 nm using an Epoch Microplate Spectrophotometer (BioTek Instruments, Winooski, VT, United States) immediately after the addition of a 1,9-dimethylmethylene blue solution (Sigma-Aldrich). GAG content was calculated using a standard curve, which was made using different concentrations of chondroitin sulfate sodium salt (Sigma-Aldrich). Final values were expressed as μg of GAG per dry weight of sample. Collagen content was determined based on hydroxyproline (HYP) content, which was measured using a spectrophotometric method (Chan et al., 1998 (link)). The amount of HYP in the samples was then determined using a calibration curve prepared using HYP assay (Sigma-Aldrich), and total collagen content per mg dry weight of sample as calculated using a HYP-to-collagen ratio of 1:7.2.
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7

Quantifying Chondroitin Sulfate in BC Scaffolds

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BC-GAG nanocomposite scaffolds were prepared by incubation of BC scaffolds (2×2 mm dimensions, ~50 mg) with chondroitin sulfate sodium salt (0.5 mL of 10 mg/mL stock, Sigma-Aldrich Co., St Louis, MO, USA) by shaking continuously for 24 hours. The scaffolds were then washed 2–3 times with ultrapure water to remove the unbound chondroitin sulfate. The chondroitin sulfate bound to BC was estimated using 1,9-dimethylmethylene blue (DMMB) dye.25 (link) Briefly, 6 mL of DMMB dye was added to each BC scaffold and vortexed vigorously for 30 minutes to promote complete complexation of bound chondroitin sulfate to the dye. The insoluble GAG–DMMB complex was separated by centrifugation (12,000× g, 10 minutes) and dissolved in 6 mL decomplexation solution (50 mM sodium acetate buffer, pH 6.8, containing 10% n-propanol and 4 M guanidine hydrochloride). Absorbance was measured at 656 nm. Assays were performed in triplicate.
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8

Quantifying GAG and DNA Content in Microtissues

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GAG content in the culture medium and in tissues was quantified using 1,9-dimethyl-methylene blue (DMMB, Sigma-Aldrich) assay, as previously described.20 (link),21 (link),30 (link) Microtissues, and amalgamated microtissues, were digested overnight at 60°C in 1 mL solution containing 1.6 U/mL papain and L-cysteine (both from Sigma-Aldrich). Twenty-five microliter of tissue digest or the medium collected during medium exchanges was combined with 200 µL of DMMB dye in 96 well plates (Nunc), and absorbance was measured at 590 nm in a plate reader (ThermoFisher’s Multiscan GO). A standard curve was generated using dilutions of chondroitin sulfate sodium salt extracted from shark cartilage (Sigma-Aldrich). DNA content in the tissues was estimated using the PicoGreen assay, as per the manufacturer’s instructions (ThermoFisher). PicoGreen solution was added to the tissue digests in half volume black 96 well plates (Costar) and samples read at 480 nm excitation and 520 nm emission on a plate reader (OMEGA FLUOstar multi-plate reader, BMG Labtech). A DNA standard curve was generated using λ-DNA (Quant-iT™ PicoGreen™ dsDNA Assay Kit, ThermoFisher).
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9

Quantification of Proteoglycan Removal

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Supernatants collected throughout the 10-day incubation period were used to quantify removal of proteoglycans by detection of GAGs [20 (link)]. Briefly, a 100 μL aliquot of supernatant from each day of extraction was incubated with 1 mL of 1,9-dimethylmethylene blue assay (DMMB) solution under vigorous agitation for 30 min at room temperature (RT) to promote DMMB complexation with proteoglycans. Then, PG-DMMB complex was separated by centrifugation (12.000 xg for 10 min), supernatant was discarded and pellet was incubated with 500μL of decomplexation solution under agitation for 30 min. A standard curve was generated using chondroitin sulfate sodium salt from shark with concentrations from 0.5 to 64 μg/mL (Sigma-Aldrich). Absorbance was measured at 656 nm in a spectrophotometer (Spectramax Plus, Molecular devices, Sunnyvale, CA). Proteoglycans concentration was expressed in μg/ml/mg of dry dentin after subtracting the GuHCl solution background. The data were subjected to Levene’s test and Two-way ANOVA/One-way ANOVA and Games Howell post hoc test (α = 0.05).
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10

Fabrication of Mineralized Collagen Scaffolds

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Mineralized collagen scaffolds were fabricated using previously described procedures.10,11,21,27,40–45 (link) In a cooled, jacketed vessel, 1.9 w/v% type I bovine collagen (Sigma-Aldrich, Missouri, USA), 0.84 w/v% chondroitin-6-sulfate (Sigma-Aldrich), and Ca(OH)2, H3PO4, and Ca(NO3)2·4H2O were thoroughly homogenized, making sure to prevent collagen clumping. The mineralized collagen suspension was transferred to 7.62 × 7.62 cm aluminum molds to create isotropic scaffolds. Alternatively, the suspension was pipetted into Teflon molds with a copper base to create anisotropic scaffolds.46 (link) The suspensions were cooled at a constant rate of 1 °C min−1 from 20 °C to −10 °C. Once frozen, the suspension was held at this temperature for 2 hours then lyophilized (0.2 torr pressure, 0 °C) in a VirTis Genesis 25XL Lyophilizer (SP Industries, Inc., Pennsylvania, USA).
Anisotropic mineralized collagen scaffolds with disparate GAG content were fabricated following the same method. However initial mineralized collagen suspensions were created using one of three potential glycosaminoglycans: chondroitin-6-sulfate (chondroitin sulfate sodium salt from shark cartilage, Sigma-Aldrich), chondroitin-4-sulfate (sodium chondroitin sulfate A, Toronto Research Chemicals Inc., Ontario, Canada), or heparin sulfate (Heparin sodium salt from porcine intestinal mucosa, Sigma-Aldrich).
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