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10 protocols using filipin 3

1

Filipin Staining of Cholesterol

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Filipin III (Santa Cruz Biotechnology) was dissolved in DMSO at 5 mg/mL, aliquoted and stored under N2 at − 80 °C until use. CU428 and II8G-IA cultures at ~ 3 × 105 cells/mL were treated with cholesterol in the presence or absence of U18666A as indicated above. After 1 h of incubation, samples of 200 µL were transferred to microcentrifuge tubes, centrifuged at 1000 × g, washed with 1 mL of 10 mM Tris–HCl pH 7.5 and resuspended in 100 µL Tris–HCl. Cells were fixed through the addition of an equal volume of 4% paraformaldehyde—3.4% sucrose in phosphate buffer saline (PBS) for 15 min at room temperature. They were then washed twice with 400 µL PBS and resuspended in 100 µL PBS. Staining was performed with 50 µg/mL Filipin for 1 h at room temperature with rotation in a HulaMixer (Invitrogen). Finally, the cells were washed twice with 400 µL PBS and resuspended in 40 µL PBS.
Cells mounted under coverslips were observed and photographed using a Nikon Eclipse E-800 epifluorescence microscope equipped with an Andor Clara DR-1306 monochrome camera. Filipin staining was visualized using a UV-2A filter cube. After being taken, the images were processed and analyzed using the Fiji software44 (link).
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2

Filipin-Based Cellular Fixation

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Cells are fixed with 4% paraformaldehyde (Sigma) for 15 min and incubated with 0.05 mg/mL Filipin III (Santa Cruz Biotechnology) in the dark for 2 h.
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3

Confocal Microscopy for Cellular Cholesterol Quantification

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We performed confocal laser scanning microscopy (Olympus, FV1000) to image and examine the cellular cholesterol levels using filipin III (catalog no. SC-205323A; Santa Cruz Biotechnology, USA). J774A.1 Mϕ were allowed to adhere to 12- to 15-mm coverslips (catalog no. TCP017-1X200NO; Himedia, India). Macrophages were infected with L. donovani for 12 h. As per the experimental layout, cells were treated with rapamycin and RA postinfection. Later, the slides were stained with 50 μg/mL filipin III (6 (link), 25 (link)). Thereafter, the excess dye was removed by washing with 1× phosphate-buffered saline (PBS). Coverslips were mounted in glycerol mounting medium with an antifading agent (catalog no. P10144; Thermo Fisher Scientific, USA).
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4

Immunofluorescence Staining of Cholesterol

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Cells seeded on 12-mm glass coverslips (Nunc) were washed twice with PBS and fixed with 4% paraformaldehyde (PFA) for 20 min. PFA was removed by rinsing twice with PBS and cells were permeabilised with 0.1% (v/v) Triton X-100 in PBS (5 min), washed twice with PBS, and incubated in blocking buffer [0.2% (w/v) fish skin gelatin (FSG) plus PBS, 60 min]. Primary antibody [anti-SQS rabbit mAb, ab195046 (Abcam), 1:200] in blocking buffer was added (60 min), the coverslips were rinsed twice with PBS and incubated in the dark (60 min) with Alexa Fluor 488-conjugated secondary antibody (1:400 in blocking buffer). DNA was stained using 5 µg/ml DAPI before mounting in Fluoromount G (Southern Biotech, Birmingham, AL). For Filipin III staining, after fixation with 4% PFA, cells were rinsed three times with PBS before quenching residual PFA with 1.5 mg/ml glycine plus PBS (10 min). Cells were incubated with Filipin III (Santa Cruz Biotechnology, 25 µg/ml in PBS, 30 min) and rinsed three times with PBS. Coverslips were sealed with transparent nail polish. Antibody-bound proteins were visualised at an excitation wavelength of 488 nm and DAPI and Filipin III were imaged at 405 nm using an LSM 710 (Zeiss, Oberkochen, Germany) confocal microscope. Images were processed using ImageJ and Adobe Illustrator software.
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5

Cholesterol Visualization in KP-4 Cells

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Briefly, KP-4 cells (2×104 cells/well) were seeded into CELLview 35-mm glass-bottom cell culture dishes with four compartments for 24 h, and the cells were treated in the presence (1 µM) or absence of U18666A at 37°C for 24 h. Next, cells were washed with PBS and fixed with 3% paraformaldehyde for 1 h at room temperature, followed by incubation with 20 mM glycine for 10 min to quench the paraformaldehyde. For cholesterol staining, the cells were incubated with 25 µg/ml filipin III (Santa Cruz Biotechnology, Inc.) for 2 h at room temperature. After washing with PBS, the cells were observed using a BZ-X810 digital microscope (Keyence Corporation) featuring PlanApo 60× NA1.40 (Nikon Corporation).
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6

Cholesterol Homeostasis and Wnt Signaling

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SW1116, SW480 were originally obtained from ATCC and reserved in our laboratory. Filipin III (Santa Cruz), Bodipy 493/503 (Thermo Fisher), Cholesterol, β-Cyclodextrin, and AOM (Sigma), Avasimibe and LGK974 (Selleck), Nystatin (MCE), DSS (MP Biomedicals). Antibody against YAP, pYAPSer127, β-Catenin, c-Myc, FZD8, RhoA, c-Jun, GST were all from Abcam. Antibody against LRP6, pLRP6Ser1490, GSK-3β, pGSK-3βSer9, pLATS1Ser909, LATS1 were from CST. Antibody against pc-JunSer63, FZD1, CYR61 were from Sangon Biotech. Antibody against LDLR, HMGCR, SOAT2, FZD2, FZD5, FZD7, Myc were from Proteintech. Anti-SOAT1 was from Abclonal. Anti-GAPDH was from ZSGB-Bio.
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7

Cholesterol Homeostasis Modulation Assay

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The following compounds were used: 25-hydroxycholesterol (25HC, Sigma-Aldrich, St. Louis, MO), DAPI (Sigma-Aldrich), aminooxybiotin (Biotium, Fremont, CA), aniline hydrochloride (Sigma-Aldrich), avasimibe (Sigma-Aldrich), cholesterol (Sigma-Aldrich), doxycycline (Sigma-Aldrich), filipin III (Santa Cruz Biotechnology, Dallas, TX), gel filtration markers kit (MWGF1000, Sigma-Aldrich), GGTI 298 trifluoroacetate salt hydrate (Sigma-Aldrich), Hygromycin B Gold (InvivoGen, San Diego, CA), IAA (iodoacetamide, Sigma-Aldrich), lipoprotein-depleted fetal bovine serum (LPDS, Kalen Biomedical, Germantown, MD), LMNG (lauryl maltose neopentyl glycol, Anatrace, Maumee, OH), methyl-β-cyclodextrin (MBCD, Sigma-Aldrich), MG132 (Merck Chemicals Ltd, Darmstadt, Germany), N-ethylmaleamide (NEM, Thermo Fisher Scientific), propidium iodide (Sigma-Aldrich), puromycin (Invivogen), SILAC Lys-8-Arg-10 kit (282986444, Silantes GmbH, Munich, Germany), sodium-meta-periodate (Sigma-Aldrich) and ZA (zaragozic acid A, Santa Cruz Biotechnology).
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8

Cellular Uptake Mechanisms of Pharmaceutical Compounds

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LA and RAN (purity >98%, each) were purchased from Shaanxi Chenguang Pharmaceutical Co., Ltd. (Xi’an, China). AS was purchased from Shaanxi Minsheng Medicine Co., Ltd. (Xi’an, China). Caprylocaproyl macrogol-8 glycerides (Labrasol®) and glyceryl palmitostearate (Precirol® ATO 5) were provided by Gattefossé (Montesquieu, France). Polyoxyl castor oil (Cremophor® RH40) was obtained from BASF (Ludwigshafen, Germany). High-glucose Dulbecco’s modified Eagle medium (DMEM-high) was obtained from Thermo Fisher Scientific (Waltham, MA, USA). Trypsin (0.25%), 0.02% ethylenediaminetetraacetic acid (EDTA), fetal calf serum (FCS), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT), and phosphate-buffered saline (PBS) were obtained from Shanghai Usen Biotechnology (Shanghai, China). Filipin III, genistein, cytochalasin D, 5-(N,N-dimethyl)-amiloride hydrochloride, monensin sodium, Lyso-Tracker® Red DND-99, and Hoechst33258 stain were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). Sodium azide was obtained from Beijing Bei-na Kai-chuang Biotech Co., Ltd (Beijing, China), and chlorpromazine hydrochloride was obtained from Aladdin Industrial Inc. (Shanghai, China). All other chemicals were obtained from Sinopharm Chemical Reagent (Shanghai, China) and were of high-performance liquid chromatography (HPLC) or analytical grade.
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9

Lipid Metabolism Regulation in Liver Disease

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Triton X-100, PEG300, and Tween 80 were purchased from Sigma-Aldrich. Bodipy 493/503 was purchased from Thermo Fisher Scientific. Filipin III was purchased from Santa Cruz. Etomoxir, avasimibe, palmitic acid, and oleic acid were purchased from Tsbiochem in China. Diethylnitrosamine was purchased from Tokyo Chemical Industry in Japan. 60% HFD was purchased from Moldiets, Biopike in China. Rabbit anti-CDK4(ab108357, 1:1000 for WB), rabbit anti-CDK6 (b124821, 1:1000 for WB) were purchased from Abcam (Cambridge, UK). Rabbit anti- SOAT1 (A6311, 1:1000 for WB) was purchased from Abclonal. Rabbit anti-SOAT1 (NB400-141, 1:1000 for IHC) was purchased from Novus. Rabbit anti-CyclinD1 (26939-1-AP, 1:1000 for WB, 1:100 for IHC), Anti-CPT1A (15184-1-AP, WB: 1/1000; IHC:1/100), Anti-Perilipin 3/TIP47 (10694-1-AP, WB: 1/1000; IHC 1/100), Anti-ACADM (55210-1-AP, WB: 1/500), Anti-ACADL (17526-1-AP, WB: 1/500), Anti-GAPDH were purchased from Proteintech.
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10

Characterization of Lipid-Mediated Cellular Uptake

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Fetal bovine serum (FBS) was obtained from Biosera (East Sussex, UK); nonessential amino acid solution (NEAA), CPZ, sodium phosphotungstate, and 4% PFA were obtained from Nacalai Tesque, Inc. (Kyoto, Japan). PC, cholesterol, and PE were kindly provided by Nippon Fine Chemical Co., Ltd. (Tokyo, Japan). Chloroform, methanol, penicillin–streptomycin-L-glutamine solution (× 100) (PSG), and PI were obtained from Wako Pure Chemical Industries, Ltd. (Osaka, Japan). MβCD was obtained from Tokyo Chemical Industry Co., Ltd. (Tokyo, Japan). EIPA was obtained from R&D Systems, Inc. (Minneapolis, MN, USA). Filipin III was obtained from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). Alum was obtained from Thermo Fisher Scientific (Waltham, MA, USA). Dulbecco’s modified Eagle’s medium (DMEM) and Roswell Park Memorial Institute (RPMI) 1640 medium were obtained from Nissui Pharmaceutical Co., Ltd. (Tokyo, Japan). All other chemicals used were of the highest commercially available grade.
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