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5 protocols using anti par

1

Parkin-siRNA Lentivirus Impacts Mitochondrial Function

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The Parkin‐siRNA lentivirus and control lentivirus were constructed by Genechem. 3,4‐dihydro‐5‐[4‐(1‐piperidinyl)butoxy]‐1(2H)‐isoquinoline (DPQ) was from Apexbio (Houston, USA). Cyclosporin A and carbonyl cyanide‐4‐(trifluoromethoxy)phenylhydrazone (FCCP) was from Selleck. N‐acetyl cysteine was from Beyotime (S0077). Anti‐PAR, Anti‐PARkin, anti‐COX IV, anti‐cyclophilin D (CypD) and anti‐translocator protein (TSPO) was from Abcam. Anti‐poly(ADP‐ribose) polymerase 1 (PARP‐1) was from Proteintech. Secondary antibodies for Western blotting were from Cell Signaling Technology.
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2

RECQ1 Interactome Analysis by Immunoprecipitation

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Immunoprecipitation experiments were performed as previously described (25 (link)). Lysates were prepared from 2.5 × 106 cells using RIPA buffer (0.1% SDS, 0.5% Na-deoxycholate, 1% NP40, 150 mM NaCl, 1 mM EDTA, 50 mM Tris/Cl, pH 8) supplemented with phosphatase, protease inhibitors and benzonase. One milligram of lysate was incubated overnight at 4°C with BcMagTM Magnetic Beads (Bioclone) conjugated with 4 μg of anti-RECQ1 antibody under rotation, according to the manufacturer instructions. After extensive washing in RIPA buffer, proteins were eluted in 2× electrophoresis buffer and subjected to SDS–PAGE and western blotting.
Western blotting were performed using standard methods. Blots were incubated with primary antibodies against RECQ1 (Santa Cruz Biotechnology), SMARCAL1 (Bethyl), MRE11 (Novus Biological), DNA2 (Abcam), EXO1 (Santa Cruz Biotechnology), anti-PAR (Abcam), tubulin (Sigma-Aldrich) and lamin B1 (Abcam). After incubations with horseradish peroxidase-linked secondary antibodies (Jackson Immunosciences), the blots were developed using the chemiluminescence detection kit ECL-Plus (Amersham) according to the manufacturer's instructions. Quantification was performed on scanned images of blots using the Image Lab software, and the values shown on the graphs represent normalization of the protein content evaluated through lamin B1 or tubulin immunoblotting.
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3

Immunoblotting of Muscle Protein Markers

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The following antibodies were used: anti-macroH2A1.125 (link); anti-macroH2A1.2 (Cell Signalling, 4827S); anti-macroH2A1 and antimacroH2A218 ; anti-MyoD (Santa Cruz, sc-760), anti-eMHC F1.652 (Santa Cruz, sc-53091), anti-Myogenin F5D (Santa Cruz, sc-12732); anti-GFP (SantaCruz, sc-9996); anti-histone H3 (AbCam, ab-1791); anti-PARP-1 (Abcam Ab6079, Trevigen 4338-MC-50); anti-NPM1 (Abcam), anti-PAR (AbCam ab14713, Trevigen 4336-APC-050), anti-Tubulin (Sigma-Aldrich, T6074), anti-NPM1 (Abcam, ab10530), secondary anti-mouse and anti-rabbit conjugated to HRP (DakoCytomation). The relative intensity of immunoblot bands was quantified by ImageJ software (version 2.0.0-rc-15/1.49k).
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4

Western Blot Analysis of Endothelial Proteins

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Equal amounts of protein extracted from HAECs were separated on 10% SDS-PAGE and electro-transferred onto nitrocellulose membrane (Amersham Biosciences, NJ, USA). After being blocked with 5% nonfat milk for 2 h at room temperature, blots were washed in TBS-T 3 times for 10 min and incubated with primary antibodies at 4°C overnight. The primary antibodies were as follows: anti-β-actin (1 : 1000, Cell Signaling Technology, MA, USA), anti-PARP-1 (1 : 500, Sigma-Aldrich), anti-PAR (1 : 1000, Abcam, MA, USA), anti-iNOS (1 : 200, Abcam, MA, USA), anti-ICAM-1 (1 : 500; Santa Cruz Biotechnology, CA, USA), and anti-NF-κB p65 (1 : 1000, Cell Signaling Technology). After being washed in TBS-T, membranes were incubated with secondary antibody for 2 h at room temperature. Signals were detected by enhanced chemiluminescence (Millipore, MA, USA) and analyzed by use of Image-Pro Plus 6.0.
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5

Immunoblotting of Muscle Protein Markers

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The following antibodies were used: anti-macroH2A1.125 (link); anti-macroH2A1.2 (Cell Signalling, 4827S); anti-macroH2A1 and antimacroH2A218 ; anti-MyoD (Santa Cruz, sc-760), anti-eMHC F1.652 (Santa Cruz, sc-53091), anti-Myogenin F5D (Santa Cruz, sc-12732); anti-GFP (SantaCruz, sc-9996); anti-histone H3 (AbCam, ab-1791); anti-PARP-1 (Abcam Ab6079, Trevigen 4338-MC-50); anti-NPM1 (Abcam), anti-PAR (AbCam ab14713, Trevigen 4336-APC-050), anti-Tubulin (Sigma-Aldrich, T6074), anti-NPM1 (Abcam, ab10530), secondary anti-mouse and anti-rabbit conjugated to HRP (DakoCytomation). The relative intensity of immunoblot bands was quantified by ImageJ software (version 2.0.0-rc-15/1.49k).
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