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19 protocols using cd62l mel 14

1

Comprehensive Flow Cytometry and ChIP-qPCR Protocol

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For flow cytometry analysis, antibodies specific for CD3e (2C11), CD19 (6D5), CD11b (M1/70), CD11c (N418), CD4 (RM4-5), CD8a (GK1.5 or 53.67), DX5 (DX5), Gr-1 (RBC-8C5), Ter-119 (Ter-119), and CD62L (MEL14) were purchased from BD Biosciences, BioLegend, and eBioscience.
For ChIP-qPCR analysis, an Ess2 specific antibody was generated in our laboratory (13 (link)), and an antibody, specific for c-Myc (9402S), was purchased from Cell Signaling Technology.
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2

LCMV-specific T cell Adoptive Transfer

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Spleens were collected from LCMV-Armstrong–infected mice (>1 month infected), and a single-cell suspension was prepared. LCMV GP33–41–specific Tmem cells were enumerated by staining with H-2Db-GP33 tetramer (Baylor College of Medicine), CD127 (SB/199, BD Biosciences), and CD62L (MEL-14, BD Biosciences). LCMV GP33–41–specific Tmem cells (104 cells) in 200 μL PBS were adoptively transferred into tumor-challenged mice by i.v. injection. Twenty-four hours after adoptive T cell transfer, mice were injected i.v. with 2 × 108 PFU VSV-gp33 in 200 μL PBS. Concomitantly, MS-275 (MilliporeSigma) was i.p. injected into mice (100 μg/mouse in 50 μL PBS) daily for 5 days. Selective lymphocyte depletion was conducted using mAbs (Bio X Cell) specific for CD8, CD4, or NK1.1. Mice were injected with 250 μg mAb in 500 μL PBS on day –1 and day 1 after vaccination and every 2 weeks thereafter (150 μg).
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3

Comprehensive T Cell Phenotyping Protocol

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Human cells were stained with fluorescence-conjugated antibodies to CD3 (clone HIT3a), CD4 (clone RPA-T4), CD8 (clone RPA-T8), CD45RA (clone HI100), CD45RO (clone UCHL1), CD62L (clone DREG–56), CCR7 (clone 150503) (BD Biosciences), and CD7 (clone 124-1D1, eBioscience). T cell subsets were enriched by negative selection with a RosetteSep Human T Cell Enrichment Cocktail (StemCell Technologies) from peripheral blood and ovarian cancer tissues. Naïve T cells were obtained with CD45RO bead–negative selection (Miltenyi Biotec) and sorted and confirmed by FACS with 98% purity. Mouse single-cell suspensions were prepared from thymus, bone marrow, peripheral blood, lymph nodes, and spleen and labeled with fluorescence-conjugated antibodies to CD3 (clone 17A2), CD4 (clone RM4–5), CD8 (clone 53-6.7), CD19 (clone 1D3), CD44 (clone IM7), CD45.1 (clone A20), CD62L (MEL–14), CD90 (clone 53-2.1) (BD Biosciences), CD45.2 (clone 104), and CD45RB (clone C363.16A, eBioscience). Then, if necessary, the cells were sorted (BD FACSAria) or acquired on an LSR II flow cytometer (BD Biosciences), and data were analyzed with DIVA software (BD Biosciences).
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4

Multiparametric Flow Cytometry Analysis

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LIVE/DEAD Fixable Red or LIVE/DEAD Fixable Aqua (Invitrogen) staining was performed at 4°C or on ice for 15 min in PBS. Surface Ab staining was performed at 4°C or on ice for 20 min in PBS containing 2% FBS and 2 mM EDTA. For staining intracellular transcription factors, fixation and permeabilization was performed with the eBioscience Intracellular Fixation & Permeabilization Buffer Set Kit prior to intracellular staining for 1 h at 4°C or on ice. Abs for flow cytometry included CD4 (RM4-5; Invitrogen), CD8 (53-6.7; eBioscience), CD25 (PC61; BD Biosciences), CD44 (IM7; eBioscience), CD62L (MEL-14; BD Biosciences), and Foxp3 (FJK-16S; eBioscience). Cells were analyzed or sorted on LSR II, LSRFortessa, and FACSAria II flow cytometers (BD Biosciences) with BD FACSDiva software. Data analysis was performed using FlowJo v.10.2 (Tree Star). FACS data presented in Fig. 3 are gated on forward scatter and side scatter properties indicative of singlet lymphocytes and live CD4+CD8(CD4SP) cells.
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5

Comprehensive Multiparameter Flow Cytometry

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The Cyan ADP flow cytometer (Beckman Coulter, Indianapolis IN) was used for all flow samples. Antibodies for these surface markers were used for flow cytometry: CD3 (145-2C11, BD Bioscience Franklin Lakes, NJ, USA), CD4 (RM4-5, BD Bioscience), anti-CEA CAR (Wi2, Immunomedics Morris Plains, NJ, USA), CD11b (M1/17, BD Bioscience), Ly6C (AL-21, BD Bioscience), Ly6G (1AB, BD Bioscience), PD-L1 (MIH5, BD Bioscience), CD62L (MEL-14, BD Bioscience), CCR7 (4B12, BD Bioscience), CD44 (IM7, BD Bioscience). Intracellular FoxP3 staining was performed with Mouse FoxP3 Permeabilization Kit (BD Bioscience). Single stain and isotype controls were used for each experiment. Analysis of acquired flow samples was performed with FlowJo software (Tree Star Inc., Ashland OR).
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6

In Vitro Proliferation Assay for Adult and Neonatal CD8+ T Cells

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For in vitro proliferation experiment, gBT-1 CD8+ T cells from adult and neonatal mice were isolated by positive magnetic selection. Purified cells were labeled with CFSE dye 36 (link), resuspended in RPMI 1640 (Lonza, Basel, Switzerland) supplemented with 10% heat inactivated serum (PAA Laboratories, Pasching, Austria) and stimulated with peptide (10−9M) in the presence of IL-2 (100U/ml). Cells were collected at 4, 16, 20, 40, 52, and 64 hours post-stimulation. To determine total cell number, 1×104 unlabeled calibrite beads (BD Biosciences, Mountain View, CA) were added to samples prior to staining procedures. Cells were stained with monoclonal antibodies to anti-CD8α (53–6.7, cat # 48–0081–82, eBiosciences, San Diego, CA), anti-CD4 (GK1.5, cat # 56–0041–82, eBiosciences), anti-CD62L (MEL-14, cat # 562404, BD Biosciences, San Jose, CA) and anti-Ly6c (HK1.4, cat # 47–5932–82, eBiosciences). To determine cell viability, cells were stained with fixable viability dye-e780 (65–0856–14, eBiosciences) according to manufacturer’s instruction. The number and phenotype of cells in each division was estimated using FlowJo’s proliferation analysis (Treestar, OR). We used four replicates of adult and four neonatal cells in our in vitro experiment (based on our pilot study).
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7

Multiparameter Flow Cytometry Phenotyping

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Fc receptors were blocked using anti-16/32 (2.4G2; BD Biosciences) and cells were stained with fluorescent Abs to detect cell surface expression of 4-1BB (17B5), CD4 (RM4-5), CD11b (M1/70), CD25 (PC61.5), CD44 (IM7), CD45.1 (A20), B220 (RA3-6B2), ICOS (7E.17G9) NK1.1 (PK136), and Ter119 (Ly-76), all from eBioscience, in addition to CD8α (53-6.7), CD28 (37.51), and CD62L (MEL-14) from BD Biosciences. Data were acquired using a FACSCanto II (BD Biosciences) and analyzed with FlowJo software (TreeStar).
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8

Multiparametric Flow Cytometry Analysis

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Fc receptors were blocked with anti-CD16/32 (2.4G2) prior to staining with fluorescently labeled Abs for cell surface expression of CD62L (MEL-14) and CD8α (53-6.7) from BD Biosciences, CD4 (RM4-5), NK1.1 (PK136), Ter119 (Ly-76), CD11b (M1/70), B220 (RA3-6B2), CD44 (IM7), CD71 (R17217), CD25 (PC61.5), and CD45.1 (A20) from eBioscience, and CD98 (RL388) from BioLegend. Data were acquired using a FACS Canto II (BD Biosciences) and analyzed using FlowJo software (TreeStar).
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9

Multiparametric Flow Cytometry Staining

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Cell staining was done with fluorescently labeled mAbs to CD5 (53–7.3), CD4 (RM4-5), CD8α (53–6.7), CD24 (M1/69), TCR-Vα2 (B20.1TCR-Vβ6 (RR4-7), TCRγ (GL-3), and TCRβ (H57-597) were purchased from BD; CD62L (MEL-14), CD44 (IM7), CD69 (H1.2F3), CD3 (145.2C11), and FoxP3 (3G3) were obtained from TONBO Bioscience; CD25 (PC61.5), CD19 (6D5), CD161 (PK136), and CD6 (OX129) were purchased from BioLegend; and Nur77 (12.14) was obtained from eBioscience; all were used according to the manufacturer’s instructions. FACS analyses were done on a LSRII 564 or FACS Canto II system (BD) using FlowJo software (TreeStar). Cell viability was evaluated either with SYTOX Blue (Life Technologies) or 633- or 405-nm Viability dyes (Life Technologies). Apoptotic cells were detected by using Annexin V-FITC apoptosis detection kit (Immunostep).
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10

Multiparameter Flow Cytometry of Immune Cells

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Cells were seeded in a 96-well plate and stained with fluorochrome-conjugated antibodies for 20 min at 4 °C in the dark. Cells were subsequently washed with PBS containing 2% fetal bovine serum. The following antibodies were used: CD8 (53-6.7; BD Biosciences), CD62L (MEL-14; BD Biosciences), CCR7 (4B12; eBioscience, San Diego, CA, USA), CD103 (2E7; eBioscience), CD25 (PC61; BioLegend), CD45.2 (104; BioLegend), CD44 (IM7; BioLegend), CD69 (H1.2F3; BioLegend), and CD4 (RM4-5; BioLegend). Cells were stained with LIVE/DEAD® Fixable Blue Dead Cell Stain (Invitrogen, Carlsbad, CA, USA) to discriminate dead cells. All stained samples were acquired using CytoFLEX LX instrument (Beckman Coulter), and the data were analyzed using the FlowJo software (BD Biosciences).
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