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115 protocols using c11 bodipy581 591

1

Lipid ROS Quantification in Neurons

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Following all interventions, cells grown in confocal dishes were stained with 2 μM C11-BODIPY 581/591 (D3861, Invitrogen, Carlsbad, CA, USA) for 30 min at 37 °C. Lipid ROS levels in primary neuronal cells were analyzed using a confocal microscope (Olympus FV 3000). Nonoxidized C11 was observed under the 594-nm excitation channel, while oxidized C11 was observed under the 488-nm excitation channel. Lipid ROS levels were assessed as the mean fluorescence intensity (MFI) of the 488-nm excitation channel.
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2

Lipid-ROS Assessment for Ferroptosis

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The accumulation of lipid-ROS is a major feature of ferroptosis and can be used to infer the degree of ferroptosis [47 (link)]. Cells were treated with DMSO, anisomycin, or SB203580 plus anisomycin for 24 h or 12 h. Then, cells were incubated with 3 μM C11-BODIPY 581/591 (Invitrogen, USA) in serum-free DMEM medium for 30 min at 37°C in an incubator. Afterwards, cells were washed three times with serum-free medium, trypsinized, and resuspended in PBS before detected by flow cytometry. Lipid-ROS levels were evaluated by the fluorescence intensity of FITC channel, and the mean fluorescence intensities (MFI) of FITC were calculated for each sample. Experiments were performed in triplicate.
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3

Quantifying Cellular Oxidative Stress

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Cells were seeded at 3 × 105 cells per well in 6-well plates. Next day, cells were treated with erastin (10 μM) and/or chloroquine (5 μM), 3-methylaldehyde (10 μM) for 8 h. After 8 h, cells were incubated with 2 mM CellROX® Deep Red (cytosolic ROS) or 2 μM C11-BODIPY581/591 (lipid peroxidation) (Invitrogen, Life Technologies, Grand Island, NY) for 30 min at 37 °C in the dark. After 30 min of loading, unincorporated dye was removed by washings with 2% FBS containing PBS. Samples were then centrifuged at 1000 rpm for 3 min and the pellets were resuspended in 500 μL of 2% FBS containing PBS Measurements were performed on a FACSCalibur (Becton Dickinson, San Jose, CA, USA) flow cytometer. Fluorescence of each probe was measured using FlowJo software program. The mean percentages ± SD of positive cells per total cells are shown in plots.
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4

Oxidative Stress Measurement by Flow Cytometry

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Cells were seeded in 6-well dishes before the experiment. After OGD/R treatment, the cells were harvested by trypsinization and washed with Hanks Balanced Salt Solution (HBSS; #88284, Invitrogen). The cells were resuspended in 500 μL of HBSS containing 2 μM C11-BODIPY (581/591) (#D3861, Invitrogen) and incubated for 10 min at 37 °C in an incubator with 5% CO2. The cells were then washed and resuspended in 500 μL of HBSS, strained through a 40 μm cell strainer and analyzed by flow cytometry (CytoFLEX, Beckman Coulter) or microplate reader.
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5

Quantifying Cellular Oxidative Stress

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Levels of intracellular ROS and NO and extent of lipid peroxidation in primary murine keratinocytes were determined using H2DCF-DA (Invitrogen/Life Technologies), DAF-FM-DA (Sigma), or C11-BODIPY581/591 assays (Invitrogen/Life Technologies), respectively. H2DCF-DA allows detection of intracellular H2O2, but it also detects oxygen radicals [52 (link)]. DAF-FM-DA is a probe to detect NO, but it only works under aerobic conditions and it is likely to react with an oxidative product of NO, rather than with NO itself [53 (link)]. Cells were incubated for 30 min with 50 μM H2DCF-DA or 5 μM DAF-FM-DA, or for 2 h with 2 μM C11-BODIPY581/591 in cell culture medium at 37°C prior to detachment by trypsin. Fluorescence was directly measured by flow cytometry using the BD Accuri C6 (BD Biosciences, San Jose, CA).
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6

Multiparametric Flow Cytometry Analysis

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To measure cell death, cells were stained by SYTOX® Green (S11368, Invitrogen, Carlsbad, CA, USA) to a final concentration of 1 μM for 20 min and then analysed by flow cytometry. Lipid ROS generation was measured by adding C11‐BODIPY 581/591 (D3861, Invitrogen) to a final concentration of 1.5 μM for 30 min before flow cytometry. MitoROS production was evaluated by incubating cells with MitoSOX® red mitochondrial superoxide indicator (M36008, Thermo Fisher) to a final concentration of 5 μM for 10 min before flow cytometry. JC‐1 (C2006, Beyotime) was used to indicate changes of MMP, as measured by flow cytometry.
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7

Lipid Peroxidation Evaluation in HepG2 and NCTC Cells

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First, HepG2 and NCTC cells were seeded in 6‐well plates at a density of 1.0 × 105 cell well−1, and were then cultured overnight. Afterward, the cells were pretreated with 100 µm FeCl3 for 3 h, followed by washing with PBS for three times, and further treated with different compounds at 20 µm for 12 h. After washing with PBS for three times, cells were stained with Ca‐AM at 10 µm at 37 °C for 30 min. Finally, after washing with PBS for three times, cells were re‐suspended in PBS for flow cytometry analysis on an Novocyte Flow Cytometer (USA).
To assess lipid peroxidation, HepG2 and NCTC cells were exposed to 100 µm FeCl3 and incubated for 12 h at 30 °C. Pretreated cells were washed with PBS for three times and then treated with DFO, DFX, and DFA1 at the concentration of 20 µm for 12 h. After washing with PBS for three times, cells were stained with 10 µm C11‐BODIPY581/591 (Invitrogen, USA) for 2 h. The treated cells were washed three times by PBS and re‐suspended for flow cytometry analysis on an Novocyte Flow Cytometer (USA).
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8

Lipid peroxidation measurement via flow

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Cells were plated at a density of 3 × 105 cells in 2 ml medium per well in six-well plates (Corning Falcon). The next day, the medium in each well was replaced with 2 ml fresh medium with compounds for treatment. 18 h later, the cells in each well were washed with PBS once, then incubated with 1 ml PBS containing 2 μM C11-BODIPY 581/591 (Invitrogen) at 37 °C for 15 min. After a brief PBS rinse, the cells were trypsinized and resuspended in 500 μl PBS and analyzed in an Attune NxT flow cytometer (Thermo Fisher Scientific) with the BL1 detector using the 488 nm laser line. A minimum of 10,000 single cells were analyzed per sample.
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9

Bromophenol Compound XK-81 Bioactivity Assay

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The novel marine bromophenol compound, XK-81 (Purity ≥ 98%), was supported by the Institute of Oceanology of the Chinese Academy of Sciences (Qingdao, China). Roswell Park Memorial Institute 1640 (RPMI1640), Dulbecco’s modified Eagle’s medium (DMEM), and fetal bovine serum (FBS) were purchased from Life Technologies/Gibco Laboratories (Grand Island, NY, USA); erythrocyte lysis buffer was purchased from Gefan Biotechnology (Shanghai Gefan Biotechnology, Shanghai, China); the Mito-FerroGreen kit was purchased from Dojindo (Kumamoto, Japan); C11 BODIPY 581/591 were purchased from Invitrogen (Camarillo, CA, USA); an immunohistochemistry detection system kit was bought from Bioss (Beijing, China); antibodies for GAPDH, CD80, CD206, GPX4, SLC7A11, and ACSL4 were purchased from ABclonal Technology (Wuhan, China). ELISA kits for IL-12, IL-1β, TNF-α, and IFN-γ were obtained from Nanjing Jiancheng Bioengineering Research Institute (Nanjing, China); all other chemicals were purchased from Sigma Aldrich (St. Louis, MI, USA).
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10

Lipid Peroxidation in Amylin-Exposed Myocytes

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Isolated myocytes were incubated for 2 h under Ctl conditions, with aggregated amylin and/or 400 mg/dL glucose, with 50 μmol/L poloxamer 188 for 2 h followed by aggregated amylin, and with 5 mmol/L N-acetyl cysteine (NAC) for 30 min followed by aggregated amylin. After incubation, myocytes were loaded with the fluorescent probe 4,4-difluoro-5-(4-phenyl-1,3-butadienyl)-4-bora-3a,4a-diaza-s-indacene-3-undecanoic acid (C11-BODIPY581/591; catalog #D3861; Invitrogen) and imaged with a confocal microscope (Live5; Zeiss). Upon peroxidation, the fluorescence emission peak of C11-BODIPY581/591 shifts from 590 nm (red) to 510 nm (green). Thus, lipid peroxidation was measured as the ratio between the average fluorescence intensity in the green and red channels.
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