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Cytotoxicity Assay for Activated T Cells

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L929 target cells—IL-2 primed splenocytes (effector cells) from WT and PAG KO mice were co-cultured overnight with L929 cells (target cells). The release of LDH from the lysed target cells was measured by the LDH cytotoxicity kit (ThermoFisher), and cytotoxicity was calculated relative to target cells cultured in the absence of primed T cells. Raji target cells—Murine splenocytes were cultured with 1 µg/ml SEE and 1000 U/ml mIL-2 (Miltenyi) for 72 h, followed by isolation of CD8+ T cells using isolation kit (Miltenyi). SEE loaded Raji B cells (target cells) were mixed with CD8+ T cells at different ratios, as indicated, and cytotoxicity was tested using LDH cytotoxicity kit (ThermoFisher).
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2

Comprehensive Flow Cytometry Panel for Mouse T Cells

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Flow cytometry monoclonal antibodies against mouse antigens (CD4, clone RM4-5; CD8a, clone 53–6.7; CD62L, clone MEL-14; IFN-γ, clone XMG1.2; IL-2, clone JES6-16E3; Ifnar1, clone MAR1-5A3; PD-1, clone RMP1-30; T-bet, clone 4B10) were obtained from Biolegend. Tim-3 monoclonal antibody (clone 5D12) was a gift from V. Kuchroo. Carboxyfluorescein succinimidyl ester (CFSE) was obtained from Biolegend. The following recombinant cytokines and antibodies were used for in vitro T cell cultures: mIFN-β (PBL InterferonSource, indicated concentrations), mIL-12 (R&D Biosystems, 10 ng mL-1), mIL-2 (Miltenyi, 5 ng mL-1), hTGF-β (Miltenyi, 3 ng mL-1), mIL-6 (Miltenyi, 20 ng mL-1), mIL-23 (R&D Biosystems, 20 ng mL-1), anti-mIL-4 (BioXCell; clone 11B11, 10 μg mL-1), anti-CD3 (eBioscience; Functional Grade Purified, clone 145-2C11, 2 μg mL-1), anti-CD28 (Biolegend; LEAF-purified, clone 37.51, 2 μg mL-1). Western blotting primary antibodies were obtained from BD Transduction Laboratories (Stat1, clone 42/Stat1, dilution 1:1000; Stat1 pY701, clone 14/P-STAT1, dilution 1:1000; Stat4 pY693, clone 42/Stat1, dilution 1:500), Cell Signaling (Stat4, clone C46B10, dilution 1:500) or Millipore (GAPDH, mAb374, dilution 1:1000). Anti-mouse or-rabbit secondary antibodies were obtained from Jackson Immunoresearch and were used at 1:10000.
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Cytotoxicity Assay of CD8 T Cells

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Murine splenocytes were cultured with 1 ug/mL SEE and 1000 U/mL mIL-2 (Miltenyi) for 72 hours, followed by isolation of CD8 T cells using isolation kit (Miltenyi). SEE loaded Raji B cells (target cells) were mixed with CD8 T cells at different ratios, as indicated, and cytotoxicity was tested using LDH cytotoxicity kit (ThermoFisher). In some experiments, CD8 T cells were stained with Lysotracker (ThermoFisher) before mixing with Raji cells, plated on poly-L-lysine (5 μg/ml) coated glass bottom culture 35mm plates (ibidi), and subjected to brief centrifugation prior to imaging. Images were taken with Zeiss 700 confocal microscope and analyzed with ImageJ (NIH).
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Naive CD4+ T Cell Isolation and Activation

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Naive CD4 1 T cells (CD4 1 CD62L hi CD44 2 ) were sorted from a single-cell suspension drawn from spleens with the Na€ ıve CD4 1 T cell Isolation Kit (Miltenyi Biotec, Bergisch Gladbach, Germany), and purity levels were greater than 95%, as determined by using the BD FACSCelesta. Naive T cells were used for in vitro cultures in RPMI 1640 medium (Corning, Manassas, Va) supplemented with b-mercaptoethanol, 10% FBS, and 1% penicillin-streptomycin. For T-cell activation, proliferation, and viability detection, naive T cells were stimulated with or without anti-CD3 (precoated, 5 mg/mL) and anti-CD28 (1 mg/mL; BD Biosciences, San Jose, Calif) for 3 days. For T H 2 cell differentiation, naive CD4 1 T cells were differentiated under T H 2-skewed conditions: mIL-2 (10 ng/ mL), mIL-4 (50 ng/mL), and anti-IFN-g (10 mg/mL; Miltenyi Biotec) with anti-CD3 (precoated, 5 mg/ml) plus anti-CD28 (1 mg/mL; BD Bioscience) for 7 days. In pharmacologic inhibition experiments T cells were pretreated with mock stimulant or 2-deoxy-D-glucose (2-DG; 1 mmol/L; Santa Cruz Biotechnology, Santa Cruz, Calif), rapamycin (100 nmol/L; Sigma-Aldrich, St Louis, Mo), and 5-aza-29-deoxycytidine (1 mmol/L; MedChemExpress, Monmouth Junction, NJ) and then stimulated with anti-CD3 (precoated, 5 mg/mL) and anti-CD28 (1 mg/mL; BD Biosciences) or T H 2-skewed conditions.
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