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15 protocols using urea

1

Rabbit Acupotome Surgery Protocol

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New Zealand white rabbits were purchased from Shanghai Songlian Experimental Animal Co. Ltd. (License No. SCXK (Shanghai) 2017-0008).
The disposable acupotome was purchased from Jiangxi LaoZongYi Medical Instrument Co. Ltd. (Jiangxi, China). Protease inhibitor cocktail, urea, dithiothreitol, iodoacetamide, TEAB, trypsin, BCA staining kit, and Masson staining kit were purchased from Beijing Solarbio Technology Co. Ltd (Beijing, China). Polyvinylpyrrolidone, sodium pentobarbital, acetonitrile, and formic acid were purchased from Thermo Fisher Biotechnology Co. Ltd. (USA). Polymer gypsum was purchased from Shanxi Anxin Medical Technology Development Co. Ltd. (Shanxi, China), and common gypsum was purchased from Pujiang Jianyu Sanitary Materials Co. Ltd. (Shanghai, China). Surgical blades and related instruments were purchased from Shanghai Medical Devices Wholesale Department Co. Ltd. (Shanghai, China).
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2

Quercetin Bioavailability Enhancement Protocol

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Analytical quercetin standard with a purity greater than 98 % was obtained from Shanghai Yuanye Bio-Technology Co., Ltd (Shanghai, China). Micellar casein powder with 86.98 % protein content came from Wapakoneta Ingredia Co., Ltd (Wapakoneta, America). Soybean oil and anhydrous ethanol were purchased from Macklin Biochemical Technology Co., Ltd (Shanghai, China). Digestive enzymes including porcine Pepsin (P7012) and porcine Pancreatin (P7545) were purchased from Sigma-Aldrich Trading Co., Ltd (St. Louis, MO, USA). The Ca2+ standard solution and strength regulator were purchased from Mettler Toledo International Trade Co., Ltd (Zurich, Switzerland). Other chemical reagents such as bile salt, anhydrous calcium chloride, sodium chloride (NaCl), sodium dodecyl sulfate (SDS) and urea were obtained from Solarbio Biotechnology Co., Ltd (Beijing, China).
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3

Pulverized Shrimp Shell Powder Synthesis

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The shrimp shells were dried in the oven at 90 °C and pulverized into powder with a particle size of 0.355 nm by using a grinder. Choline chloride were acquired from Yuanye Bio-Technology (Shanghai, China). Urea and coomassie brilliant blue G-250 were purchased from Solarbio (Shanghai, China). Betaine hydrochloride was purchased from Macklin (Shanghai, China). Ethylene glycol, glycerol, citric acid, hydrochloric acid, sodium hydroxide, lithium chloride (LiCl) and N,N-dimethylacetamide (DMAc) were acquired from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China).
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4

Quantifying Urease Activity in H. pylori

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AGS cells were cultured in two 12 well plates and incubated with lactobacilli (MOI = 100) and H. pylori P12-GFP (MOI = 100) for 6h. At the end of incubation, one plate of the cells was washed thrice with PBS and photographed by fluorescence and white light. A Urease detection reagent was prepared by adding concentrated hydrochloric acid into the PBS (pH=7.4) to adjust the solution to pH=6.8. Urea (Solarbio) and phenol red (Solarbio) were weighed and added to reach concentrations of 110mmol/L and 10mg/L, respectively, and then dissolved by vigorously shaking. To the other 12well plates, 1 ml Urease detection reagent was added. After 1-7 hours of reaction, 80μl medium was withdrawn to record the absorbance value at 540nm(Shmuely et al., 2004 (link); Rokka et al., 2008 (link); Tharmalingam et al., 2014 (link); Yang et al., 2020 (link)).
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5

Soy Protein Isolate Characterization

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Soy protein isolate (protein content > 85%) and urea were purchased from Solarbio Science and Technology Co., Ltd. (Beijing, China). 2-[4-(dimethylamino) phenyl]-3, 6-dimethylbenzothiazolium chloride (ThT) was purchased from Shanghai Yuanye Biotechnology Co., Ltd. (Shanghai, China). 5, 5′-Dithiobis-2-nitrobenzoic acid (DTNB) and 8-anilino-1-naphthalenesulfonate (ANS) were purchased from Aladdin Biochemical Technology Co., Ltd. (Shanghai, China). Gel electrophoresis related reagents were purchased from Solarbio Science and Technology Co., Ltd. (Beijing, China) and Beyotime Biotechnology Co., Ltd. (Shanghai, China). BCA protein assay kit was purchased from Nanjing Jiancheng Biotechnology Institute Co., Ltd. (Nanjing, China). All other chemicals were analytical grade, and deionized water was used throughout the experiment.
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6

Determination of Zearalenone and Metabolites

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Zearalenone (ZEN), α-zearalenol (α-ZOL), and β-zearalenol (β-ZOL) standards were purchased from Sigma-Aldrich (St. Louis, MO, USA) and stored at −20 °C. Stock solutions of ZEN (1 mg/L), α-ZOL (1 mg/L), and β-ZOL (1 mg/L) were prepared by dissolving them in 100% methanol. The standard solutions for high-performance liquid chromatography (HPLC) calibration were prepared by diluting the stock solution with a methanol/water (50/50, v/v) mixture. Other chemicals such as urea, sodium dodecyl sulfate (SDS), m-periodate, ploymyxin B, protease E, and lipase were purchased from Solarbio Science & Technology Co., Ltd. (Beijing, China). The Lactobacillus biochemical identification Kit and De Man Rogosa and Sharpe (MRS) medium were provided by Huankai Microbial Science & Technology Co., Ltd. (Guangzhou, China). All the other chemicals used in this experiment were of chromatographic or analytical grade.
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7

Polysaccharide Extraction from Blackberry

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Chicken breast was purchased from Fujian Chia Tai Food Co. Ltd (Longyan city, China), and the powder of blackberry (Rubus spp.) crude polysaccharide was extracted in laboratory and stored at 4 °C until use. ColorMixed Protein Marker, Coomas bright blue quick dye solution, urea, Tris solution, and SDS solution were ordered from Solarbio Science & Technology Co. Ltd (Beijing, China). Other chemicals including EDTA and potassium bromide were purchased from Macklin biochemical Co. Ltd. (Shanghai, China).
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8

Bicinchoninic Acid Protein Assay Protocol

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Bicinchoninic Acid (BCA) Protein Assay Kit was purchased from Beyotime Biotechnology (Shanghai, China). Sodium dodecyl sulfate (SDS), glycine, urea, 5,5′-Dithiobis-(2-nitrobenzoic acid) (DTNB), and bile salts were purchased from Solarbio. (Beijing, China). Salivary amylase (12 U/mg), pepsin (3 U/mg), and Trypsin (250 U/mg) in pancreatin were obtained from Yuan Ye Biotechnology Corporation. (Shanghai, China). Potassium bromide was purchased from Macklin Biochemicals Co. (Shanghai, China). NaOH, HCl, Petroleum ether, Ethylene Diamine Tetraacetic Acid (EDTA), KCl, KH2PO4, NaHCO3, NaCl, MgCl2, (NH4)2CO3, and CaCl2 were purchased from Xilong Science Co. (Guangdong, China). All the other chemicals and reagents were of analytical grade and available commercially.
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9

Comprehensive Protocol for Microbial Analyses

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Pro and Pep were purchased from the Nutrily Biotechnology, Ltd. (Anyang, Henan, China). Lactobacillus acidophilus JCM 1132 was purchased from the China General Microbiological Culture Collection Center (Beijing, China). Pepsin and trypsin were purchased from the Novozymes (Beijing, China). Bicinchoninic acid (BCA) protein assay kit, acrylamide, glycine, sodium dodecyl sulfate (SDS), Tris, urea and loading buffer were purchased from Solarbio (Beijing, China). Ammonium persulfate and tetramethylethylenediamine (TEMED) were purchased from Amersco (Framingham, USA). Coomassie Brilliant Blue R-250 was purchased from Bio-Rad (Richmond, CA, USA). MRS broth and MRS agar were purchased from Aobox Biotechnology, Ltd. (Beijing, China). Bis trifluoroacetamide (BSTFA), fatty acid methyl ester (FAME), methoxy amination hydrochloride, trimethyl chlorosilane (TMCS), standards of lactic acid, acetic acid, glycine, Gly-Gly-Gly, bacitracin and insulin were purchased from Sigma-Aldrich (St. Louis, MO, USA). 2-Chloro-l-phenylalanine was purchased from Hengbai Biological Technology, Ltd. (Shanghai, China). High performance liquid chromatography (HPLC) grades of acetonitrile, methanol, chloroform, pyridine and trifluoroacetic acid (TFA) were purchased from Fisher Scientific (Ottawa, ON, Canada).
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10

Soy Protein Isolate Enzymatic Hydrolysis

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SPI (92% protein) for the preparation of peptides was purchased from Shandong Yuxin Bio-Tech Co., Ltd. (Shandong, China). Neutral and alkaline proteases used for enzymolysis of the SPI were provided by Novozymes (Beijing, China). Rainbow pre-stained protein marker (11–180 kDa) was purchased from Genview (Glenview, USA); Laemmli sample buffer was purchased from Bio-Rad (Hercules, USA); Tris-glycine-SDS, 30% Acrylamide/Bis solution, and urea were purchased from Solarbio (Beijing, China); and ammonium persulfate, β-mercaptoethanol, and tetramethylethylenediamine (TEMED) were purchased from Ameresco (Framingham, USA). Pentobarbital Sodium was purchased from Aikon Biomedicine Co., Ltd. (Jiangsu, China). Rat IgM, IgG, IgA, IL-1β, TNF-α, and RANTES ELISA quantification kits were purchased from Myhalic Biotechnology Co., Ltd (Catalog number: RA20444 for IgM, RA20096 for IgG, RA20442 for IgA, RA20020 for IL-1β, RA20035 for TNF-α, RA20511 for RANTES, Bioswamp, Wuhan, China).
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