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49 protocols using anti ar

1

Evaluating Protein Expression in PCa Cells

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The cell lysates were prepared from PCa cells treated with GTEE or vehicle (0.3% ethanol) using PRO-PREP Protein Extraction Solution (iNtRON technology, South Korea) with protease inhibitors added. The protein concentrations of the cell lysates were assayed using a Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific). For Western blotting, 50 µg of protein extract was loaded into the sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gel and transferred onto polyvinylidene difluoride (PVDF) membranes. After blocking by 5% non-fat milk in PBST (PBS with Tween-20) buffer for 1 h at room temperature, PVDF membranes were incubated with primary antibodies for overnight at 4 °C, followed by incubation with a horseradish peroxidase (HRP)-conjugated secondary antibody. The reactive signals were visualized using an Enhanced Chemiluminescence Kit (Amersham Biosciences, Arlington Heights, IL, USA). Subsequently, the reactive protein bands were scanned and quantified using ImageJ software. Primary antibodies were used as follows: anti-SREBP-1, anti-FASN, anti-AR (Santa Cruz Biotechnology, Dallas, TX, USA), anti-SREBP-2 (Abcam, Cambridge, MA, USA), anti-caspase 3 (Novus Biologicals, Littleton, CO, USA), anti-PARP (GeneTex, Irvine, CA, USA), and anti-β-actin (Millipore, Burlington, MA, USA).
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2

Immunohistochemical Analysis of Xenograft Tissues

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MDA-MB-231 and DU145 xenografts were fixed in 10% formalin and embedded with paraffin. Embedded tissues were sectioned (10 µm) for immunohistochemistry experiments. Prior to immunostaining, paraffin sections were deparaffinized and rehydrated. Paraffin sections were first boiled in 10 mM citrate buffer (pH 6.0) to retrieve antigenicity. Sections were incubated in 3% H2O2 in PBS for 10 min at room temperature to quench endogenous peroxidase and incubated in 10% normal serum (prepared from the species in which the secondary antibodies were generated) for 1 h at room temperature to block the non-specific binding sites. Sections were incubated with the primary antibody for 1 hr at room temperature or overnight at 4 C. Antibodies were obtained from Santa Cruz Biotechnology (Santa Cruz, CA): anti-AR (catalog #sc-7305), and anti-ERα (catalog #sc-543). Following washes, sections were treated with secondary antibody for 1 h at room temperature. Then the Vectastain ABC kit (Vector Laboratories, Burlingame, CA) was used per manufacturers’ instructions. Peroxidase activity was visualized with 3,3’-diaminobenzidine. Negative controls were incubated with non-specific IgG.
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3

Western Blot Quantification for Protein Expression

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Protein extracts were prepared in a cell lysis buffer and denatured at 95 °C for 10 min, separated on SDS-PAGE gels and transferred to nitrocellulose membranes (Bio-rad Laboratories, Hercules, CA, USA). After blocking in 5% non-fat milk in T-TBS, membranes were incubated overnight at 4 °C with primary antibodies in 0.5% BSA or 2% non-fat milk in T-TBS: anti-AR (1:1000 dilution; Santa Cruz Biotechnology, Dallas, TX, USA; #7305), anti-RUNX1 (1:1000; Cell Signaling Technology; #4334), anti-SOX4 (1:1000; Abcam #52043), anti-Tubulin (1:10,000; Sigma-Aldrich; #T5168), and anti-GAPDH (1:5000; Santa Cruz Biotechnology; #32233). Secondary antibody incubation was performed at room temperature for 1 h: anti-mouse (1:5000; Li-Cor #926-32213 or Li-Cor #926-68070) or anti-rabbit (1:5000; Li-Cor; Lincoln, NE, USA; #926-32210). Membranes were then scanned using the Odyssey Imaging System and analyzed with Image Studio Ver 5.2 software (Li-Cor). Quantifications are presented below each blot as the relative mean of all experiments performed plus/minus the standard deviation, normalized to the housekeeping. All experiments were performed at least three times.
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4

Immunohistochemical Analysis of Tumor Markers

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Tumors were fixed by formalin and paraffin embedded tissue blocks were dewaxed, rehydrated, and blocked for endogenous peroxidase activity. Antigen retrieving was performed in sodium citrate buffer (0.01 mol per Litter, pH 6.0) in a microwave oven at 1000 W for 3 min and then at 100 W for 20 min. Nonspecific antibody binding was blocked by incubating with 10% fetal bovine serum in PBS for 30 min at room temperature. Slides were then incubated with anti-Ki67 (at 1:500; Neomarker), anti-AR (at 1:200; Santa Cruz Biotechnology) or anti-AR-V7 (at 1:200; Precision) at 4 °C overnight. Slides were then washed and incubated with biotin-conjugated secondary antibodies for 30 min, followed by incubation with avidin DH-biotinylated horseradish peroxidase complex for 30 min (Vectastain ABC Elite Kit, Vector Laboratories). The sections were developed with the diaminobenzidine substrate kit (Vector Laboratories) and counterstained with hematoxylin. Nuclear staining of cells was scored and counted in 5 different vision fields. Images were taken with an Olympus BX51 microscope equipped with DP72 camera.
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5

Prostate Cancer Protein Regulation

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anti-AR (Santa Cruz Biotechnology; N20 and C19 clones), anti-AR-v7 (Precision Antibodies), anti-H2A.Z (19 (link)), anti-MDM2 (Santa Cruz N20 and SMP14), anti-HA (Santa Cruz Biotechnology; Y11 clone), anti-FLAG (Sigma), anti-p53 (Dako), anti-α-tubulin (Sigma), and anti-ubiquitin (Santa Cruz Biotechnology) were included in this project. Plasmids used were pPSA-Luc, pARE3-Luc, pCMV-β-gal, pHA-ubiquitin, pMYC-MDM2, pFLAG-His-AR (20 (link)) and pFLAG-His-AR-K311R and pFLAG-V7-AR mutants generated by in vitro mutagenesis (QuikChange; Stratagene). Lentiviral AR careers were prepared as previously described (21 (link)).
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6

Immunohistochemical Analysis of Genital Tissues

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Immunohistochemistry was performed according to standard procedures using anti-BrdU (G3G4, DSHB, Cat# AB 2314035, RRID: AB_2618097), anti-AR (Santa Cruz Biotechnology, Cat# sc-816, RRID: AB_1563391), anti-β-catenin (Abcam, Cat# ab32572, RRID: AB_725966), anti-frizzled-6 (Santa Cruz Biotechnology, Cat# sc-393791, RRID: AB_2736833), and anti-LEF1 (Santa Cruz Biotechnology, Cat# sc-374522, RRID: AB_10986008), and AR and LEF1 antibodies were detected using Tyramide SuperBoost Kits (Invitrogen, B40922) and ABC Kit (Vector Laboratories, PK-6100), respectively, according to the manufacturers’ protocols. Cell proliferation and programmed cell death analyses were performed using BrdU and LysoTracker, respectively, following the previously published methods [10 (link)]. A Leica DM5500 Confocal Microscope (Leica microsystems Inc, Buffalo Grove, IL) was used for imaging. Sections of GTs (Sample size, n = 5) from three different litters were selected.
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7

Antibody Acquisition for Protein Analysis

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Antibodies for anti-Usp12, anti-Flag, anti-WDR48 (Uaf-1) and anti-α-tubulin were purchased from Sigma-Aldrich. Other antibodies used were: anti-WDR20 (Abcam and Santa Cruz, 38K), anti-HA (Santa Cruz Biotechnology, Y-11) and anti-AR (Santa Cruz Biotechnology, N-20 and C-19).
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8

Protein Expression Analysis by Western Blot

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Western blotting was conducted using standard procedures, the membrane was incubated with anti-PARP (Cell Signaling Technology, USA), anti-p53 (Santa Cruz Biotechnology, Europe), anti-Bcl-2 (Cell Signaling Technology, USA), anti-Bax (Cell Signaling Technology, USA), anti-Caspase-9 (Cell Signaling Technology, USA), anti-Caspase-3 (Cell Signaling Technology, USA), anti-AR (Santa Cruz Biotechnology, Europe), anti-Siah2 (Santa Cruz Biotechnology, Europe), anti-NCoR1 (Santa Cruz Biotechnology, Europe), anti-p300 (Santa Cruz Biotechnology, Europe), Mdm2 (Santa Cruz Biotechnology, Europe), anti-Ub (Cell Signaling Technology, USA), anti-GADPH (Abcam, Cambridge, MA, USA). And then the membrane strip were probed with a secondary antibody (1:10,000, Pure Earth Biotechology Co. Ltd.), GADPH was used as a loading control.
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9

Immunohistochemical Analysis of Tumor Markers

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Tumors were fixed by formalin and paraffin embedded tissue blocks were dewaxed, rehydrated, and blocked for endogenous peroxidase activity. Antigen retrieving was performed in sodium citrate buffer (0.01 mol per Litter, pH 6.0) in a microwave oven at 1000 W for 3 min and then at 100 W for 20 min. Nonspecific antibody binding was blocked by incubating with 10% fetal bovine serum in PBS for 30 min at room temperature. Slides were then incubated with anti-Ki67 (at 1:500; Neomarker), anti-AR (at 1:200; Santa Cruz Biotechnology) or anti-AR-V7 (at 1:200; Precision) at 4 °C overnight. Slides were then washed and incubated with biotin-conjugated secondary antibodies for 30 min, followed by incubation with avidin DH-biotinylated horseradish peroxidase complex for 30 min (Vectastain ABC Elite Kit, Vector Laboratories). The sections were developed with the diaminobenzidine substrate kit (Vector Laboratories) and counterstained with hematoxylin. Nuclear staining of cells was scored and counted in 5 different vision fields. Images were taken with an Olympus BX51 microscope equipped with DP72 camera.
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10

Western Blot Analysis of Protein Expression

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The cells or tissues were lysed in RIPA buffer and proteins were separated on 8–10% SDS/PAGE gels and transferred onto PVDF membranes (Millipore, Billerica, MA). After blocking using 5% BSA, the membranes were incubated overnight with the appropriate dilutions of specific antibodies, then the blots were incubated with HRP-conjugated secondary antibodies and detected using an ECL system (Thermo Fisher Scientific, Rochester, NY, USA). Anti-GAPDH (1:1000, 6c5) and anti-AR (1:1000, N20) antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). The anti PD-L1 antibody (Cell Signaling Technology 13684) was purchased from Cell Signaling Technology.
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