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2 protocols using glycerol free peptide n glycosidase f

1

Protein Sample Preparation for Mass Spectrometry

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Liquid chromatography–MS grade acetonitrile (ACN), methanol, and water were obtained from Burdick & Jackson (Muskegon, MI). Reagents for protein chemistry, including SDS, ammonium bicarbonate, triethylammonium bicarbonate (TEAB), iodoacetamide, DTT, sequencing-grade endoproteinase Lys-C, and formic acid (FA) were purchased from Sigma-Aldrich (St. Louis, MO). Sequencing-grade trypsin was purchased from Promega (Madison, WI). Glycerol-free Peptide:N-glycosidase F was purchased from New England BioLabs (Ipswich, MA).
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2

PNGase F-Mediated N-Glycan Profiling

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Sucrose and HEPES were acquired from Sigma-Aldrich, and protease inhibitor cocktail V was purchased from Millipore-Sigma. Glycerol-free Peptide N-glycosidase F (PNGase F) was obtained from New England Biolabs. Acetonitrile was purchased from Honeywell, and formic acid was purchased from Fisher Scientific. Porous graphitized carbon (PGC) 96-well plates were obtained from Glygen Corp. MilliQ water was used throughout the study.
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