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7 protocols using ras10

1

Raf-1 Pulldown Assay for Ras Detection

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Protein lysates from vehicle‐ and Zarnestra‐treated Panc‐1 and BxPC‐3 cells were incubated with a Raf‐1 pulldown reagent linked to agarose beads as per manufacturer's instructions (Cat no. 16117, EMDMillipore, Etobicoke, ON, Canada). Lysates were then separated on an SDS/PAGE and immunoblotted using a RAS antibody (Cat no. 05‐516 Clone RAS10, EMDMillipore).
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2

Immunoblotting for Protein Expression

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Blots were immunostained using the following primary antibodies from CST: MET (8198), P-MET (Y1234/5; 3077) as well as HA (HA.11, Covance), RAS10 (05-516, EMD Millipore, Billerica, MA), and Tubulin (ab21058, Abcam). Detection was performed using anti-mouse or anti-rabbit IgG-HRP secondary antibodies as appropriate (CST). The blots were incubated in ECL solutions per the manufacturer’s specifications (Amersham) and exposed to film.
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3

Protein Expression Analysis by Western Blot

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Total protein (40 μg) was separated by 10% SDS-PAGE and transferred to a nitrocellulose membrane. The membrane was then blocked with 5% non-fat milk for 1 h, incubated with primary antibody overnight at 4 °C, washed thrice with PBS-T (PBS plus 0.1% Tween 20), and incubated with HRP-linked secondary antibody for 1 h at room temperature. The membrane was then washed and bands were visualized by chemiluminescence assay. The following antibodies were used: uPAR, cathepsin B, ERK, p-ERK, JNK, p-JNK, p38, p-p38, Vinculin, α-Actinin, Talin, PI3K, p-PI3K, Rac-1, MEKK-1, Laminin and GAPDH (all from SCBT, Santa Cruz, CA). We also used antibodies for Paxillin, p-Paxillin, Pak-1 and p-Pak-1 (all from Cell Signaling Technology, Danvers, MA). We obtained Ras10 from Millipore (Billerica, MA).
For immunoprecipitation, cell lysates (300 μg) were pre-cleared by protein A/G micro-beads (Miltenyi Biotec, Auburn, CA) and then incubated with specific antibodies at a dilution of 1:100 overnight at 4 °C. The beads were washed with lysis buffer and resuspended in sample buffer before the immunoprecipitated protein was subjected to immunoblotting.
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4

KRAS Mutagenesis and RAS Activation Assay

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Full-length of KRAS cDNA was cut from pBabe K-Ras 12V vector (Addgene plasmid 12544)37 (link) and cloned into pcDNA3.1 (+) expression vector (Invitrogen) via BamH1 and Xba1 restriction sites. Corresponding KRAS mutations were introduced into the expression vector using QuickChange® II Site-Directed Mutagenesis Kit according to the manufacturer’s recommendations (Stratagene). The desired mutations in each construct were finally confirmed by direct sequencing. The primer sequences for mutagenesis were listed in Table 5. Ras Activation Assay Kit (Millipore) was used to measure the level of active RAS (RAS-GTP) after transient transfection of corresponding plasmid into the cell lines. In brief, 0.5 mg of cell extract was immunoprecipitated with agarose beads containing human Ras Binding Domain (RBD, residues 1–149) of Raf-1. After washing, the beads were mixed with protein loading buffer and 10% of the mixture was electrophoresed by 12% SDS-PAGE for western blot analysis as previously described.38 (link),39 (link) The primary antibodies used were pan-RAS (RAS10, Millipore; 1:2000) and p-ERK1/2 (9102, Cell Signaling; 1:1000). HRP conjugated anti-mouse secondary antibody used was purchased from DAKO (1:20000 dilution).
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5

Protein Expression Analysis by Western Blot

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Total protein (40 μg) was separated by 10% SDS-PAGE and transferred to a nitrocellulose membrane. The membrane was then blocked with 5% non-fat milk for 1 h, incubated with primary antibody overnight at 4 °C, washed thrice with PBS-T (PBS plus 0.1% Tween 20), and incubated with HRP-linked secondary antibody for 1 h at room temperature. The membrane was then washed and bands were visualized by chemiluminescence assay. The following antibodies were used: uPAR, cathepsin B, ERK, p-ERK, JNK, p-JNK, p38, p-p38, Vinculin, α-Actinin, Talin, PI3K, p-PI3K, Rac-1, MEKK-1, Laminin and GAPDH (all from SCBT, Santa Cruz, CA). We also used antibodies for Paxillin, p-Paxillin, Pak-1 and p-Pak-1 (all from Cell Signaling Technology, Danvers, MA). We obtained Ras10 from Millipore (Billerica, MA).
For immunoprecipitation, cell lysates (300 μg) were pre-cleared by protein A/G micro-beads (Miltenyi Biotec, Auburn, CA) and then incubated with specific antibodies at a dilution of 1:100 overnight at 4 °C. The beads were washed with lysis buffer and resuspended in sample buffer before the immunoprecipitated protein was subjected to immunoblotting.
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6

Ras Protein Immunoprecipitation and Detection

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The anti-DA-Raf pAb was coupled to Protein A Sepharose 4 Fast Flow (GE Healthcare). RLE cells were lysed with the lysis buffer, and the lysates were incubated with the antibody-coupled Sepharose for 60 min at 4°C [50 (link)]. After thorough washing with the lysis buffer, bound proteins were dissociated with the SDS sample buffer and detected by immunoblotting with anti-Ras mouse mAb RAS10 (Millipore).
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7

Quantifying Ras-GTP Activation

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Five million T-ALL cells were stimulated with 50 ng PMA for 3 min at 37° C before resuspension in lysis buffer containing 1% NP-40 with 0.5% n-Dodecyl-β-D-maltoside. Lysates were rotated with GST-Raf1-RBD-coated agarose beads (Millipore) for 2 h at 4° C that were subsequently washed in lysis buffer. Bound Ras-GTP was detected by Western blotting using a Ras antibody (RAS10; Millipore).
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