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6 protocols using anti pabp

1

Antibody Validation for mRNA Decay Factors

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Antibodies used in this study were as follows: rabbit polyclonal anti-DDX6 (Bethyl Laboratories), rabbit polyclonal anti-Pat1b (Bethyl Laboratories), rabbit polyclonal anti-DCP2 (Bethyl Laboratories), mouse monoclonal anti-EDC3 (Abcam), rabbit polyclonal anti-GW182 (Bethyl Laboratories), mouse monoclonal anti-eIF4E (BD Transduction Laboratories), rabbit polyclonal anti-PABP (Abcam), rabbit monoclonal anti-Ago2 (Cell Signaling), mouse monoclonal anti-myc (BioShop Canada Inc.), mouse monoclonal anti-β-actin (Sigma). Rabbit polyclonal antibodies against CNOT1 and CNOT7 were kindly provided by T. Yamamoto.
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2

Immunofluorescence Analysis of P-bodies and Stress Granules

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IFA were performed as described previously [21 (link)]. We used anti-DCP1a, anti-eIF4E, anti-G3BP1 (Santa Cruz Biotechnology) and anti-PABP (Abcam) antibodies to detect P-bodies and stress granules. Fluorescence imaging was performed using a Leica TSC SP5 laser-scanning confocal microscope.
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3

Immunoblotting Analysis of ASFV Proteins

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Total protein extracts were obtained from mock- or ASFV-infected cells and lysed in mRIPA. Quantification of total protein was done using a bicinchoninic acid (BCA) protein assay kit (Pierce) following the manufacturer′s protocol. For protein electrophoretic separation assays, 10 to 60 μg total protein was mixed with Laemmli buffer and electrophoresed in SDS-PAGE gels under reducing conditions. Following separation, proteins were transferred to Immobilon-P membranes (Millipore) and incubated with primary antibodies: anti-ASFV-DP or anti-p72 (1/1,000; generated in our laboratory), anti-actin (1/1,000; Santa Cruz Biotechnology), anti-tubulin (1/250; Sigma-Aldrich), anti-GFP (1/1,000; Roche), anti-PABP (1/200; Abcam), anti-RPS6 (1/1,000; 5G10; Cell Signaling), anti-RPL24 and anti-RPS6 (1/1,000; a kind gift from Anne Willis, MRC Toxicology Unit, Leicester, United Kingdom), or anti-RPL23a (1/500; a kind gift from Miguel Angel Rodriguez Gabriel, CBMSO, Madrid, Spain [71 (link)]), and an antibody able to recognize the inducible proteins of ASFV or anti-ASFV proteins (1/4,000; generated at CBMSO [72 (link)]). For detection, the chemiluminescent ECL Western blotting analysis system (Amersham Pharmacia) was used, following the manufacturer′s instructions.
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4

Protein Aggregation Assay with Antibodies

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The following reagents were purchased from the indicated companies: MG-132 (474790; Calbiochem, Danvers, MA, USA) and Hoechst 33258 (H-3569; Molecular Probes, Eugene, OR, USA). The following antibodies were used in this study: anti-USP10 (A300-901A; Bethyl Laboratories, Montgomery, TX, USA; HPA006731; Sigma-Aldrich, St. Louis, MO, USA), anti-ubiquitin (sc-8017; Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-p62 (PM045; MBL, Nagoya, Japan, GP62-C; PROGEN, Heidelberg, Germany), anti-G3BP1 (611127; BD Transduction Laboratories, San Jose, CA), anti-G3BP2 (A302-040; Bethyl Laboratories), anti-PABP (ab21060; Abcam, Cambridge, GB), anti-HDAC6 (sc-11420; Santa Cruz Biotechnology), anti-FLAG (M2 Monoclonal Antibody; Sigma-Aldrich), anti-GFP (sc-9996; Santa Cruz Biotechnology), anti-lamin B1 (sc-374015; Santa Cruz Biotechnology), anti-α-synuclein (S5566; Sigma-Aldrich), anti-phosphorylated α-synuclein (015-25191; FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan), anti-β-actin (sc-47778; Santa Cruz Biotechnology), anti-HA (2367S; Cell Signaling, Beverly, MA, USA) and anti-α-tubulin (CP06 Oncogene Research Products, Boston, MA, USA).
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5

Quantitative Western Blot Analysis

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Western blot was carried out essentially as described [39] (link), using the following primary antibodies: anti-HSP70, anti-eIF3B, anti-HA, anti-PABP, anti-ribosomal proteins S3, S6 and L26, anti-RNase A, anti α- and β-tubulin (all from Abcam), anti-Flag and anti-actin (Sigma-Aldrich), followed by the corresponding horseradish peroxidase-conjugated secondary antibodies (all from Sigma-Aldrich). Protein concentration was determined using the BCA Protein Assay Kit (Thermo Fisher Scientific) according to the manufacturer's instructions. Comparisons among different conditions, after calculating mean and SD values, were by Student's t test. Differences were considered significant at *P<0.05, **P<0.01 and ***P<0.005.
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6

Co-Immunoprecipitation of Ataxin-2 Complexes

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Antibodies against eIF4G, eIF3B eIF4A1 and TIA-1 were obtained from Santa Cruz Biotechnology, Inc. Anti–PABP was purchased from Abcam (UK) and Sigma-Aldrich (Germany). Anti-RPS6 was obtained from Cell Signaling Technology, Inc. Monoclonal mouse anti-ataxin-2 antibody from BD Transduction Laboratories was used for immunodetection, while a newly generated monoclonal antibody 12SCA2-2B6 directed against the C-terminal epitope SNAEHKRGPEVc (amino acids 841-851 of mouse ataxin-2) generated at the EuroSCA core facility at IGBMC Strasbourg (Dr. Yvon Trottier) was employed in Co-IP experiments. Mouse anti-GAPDH antibody was purchased from Calbiochem.
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