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11 protocols using poly l glutamic acid

1

Virus-free CAR T-cell Engineering Protocol

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Virus-free CAR transfer to primary human T cells was performed as previously described.10 (link) In brief, TRAC-targeting synthetic modified single guide RNA (100 μM; IDT) was mixed with an aqueous solution of ∼15 to 50 kDa poly(L-glutamic acid) (100 μg/μL; Sigma Aldrich)21 (link) and recombinant SpCas9 protein (61 μM; IDT) in a 0.96:1:0.8 volume ratio to form precomplexed ribonucleoproteins (RNPs). Two days after isolation, activated T cells were resuspended in TheraPEAK P3 Primary Cell Nucleofector Solution (Lonza; 5-10 × 106 cells per 100 μL) and mixed with RNP (10.35 μL per 100 μL suspension) and CD19.CD28.CD3ζ-CAR10 (link) (Addgene; Plasmid #183473) double stranded DNA–HDR template (2.5 μl/100 μL suspension). The suspension was electroporated (in 20 μL or 100 μL electroporation vessels) in a Lonza 4D nucleofector device using the program EH-115.
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2

Fabrication of Nanoscale Film Assemblies

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Films are assembled on 10 mm diameter glass slides, squared glass microscope slides or QCM-D sensor chips previously washed with detergent and rinsed with deionized water. (PLL-PGA)n and ([PLL-PGA]5-PLL-NP)n-(PLL-PGA)2 films are assembled by subsequent dipping in 0.1 g/L Poly-L-Lysine (PLL, MW 70–150 kDa, Sigma) and Poly-L-Glutamic acid (PGA, MW 50–150 kDa, Sigma) in PBS pH 7.4, and 1 g/L carboxyl functionalized latex nanoparticles (C37261, Invitrogen), of diameter 28 ± 4 nm diluted in deionized water when necessary. Each dipping step last for 10 min followed by three 1 min buffer rinse steps. Both films are subjected to chemical cross-linking with 40 mM 1-ethyl-3-(3 [dimethylamino]propyl)carbodiimide (EDC, Sigma) and 100 mM, N-hydroxysulfosuccinimide (sulfo-NHS, Sigma) for 16h. The films containing the carboxyl functionalized latex nanoparticles (NP, Invitrogen) are incubated in tetrahydrofurane (THF) for 16h in order to remove the NP from the films and rinsed three times for 20 min in buffer, as previously described.20 (link) Native (PLL-PGA)n films are formed as described above, but without chemical EDC-NHS cross-linking.
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3

T Cell CRISPR Electroporation Protocol

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After 36–48 h of stimulation, T cells were pelleted, washed with PBS, and gently resuspended in P3 buffer with supplement (Lonza Bioscience) at 2 million cells per 20 μl. The following components of a single nucleofection reaction were added to a PCR tube and mixed gently: preformed RNPs (60 pmol total), HDR template (≤8 µg), and T cells resuspended in P3 buffer. In some cases, poly-L-glutamic acid (Sigma-Aldrich; 150 µg) was also added to the mixture. This mixture was then transferred to 1 well of a 16-well 4D-Nucleofector cuvette (Lonza Bioscience) and pulsed with code EH115 unless otherwise indicated. After electroporation, the 4D-Nucleofector cuvette was placed in a 37°C tissue culture incubator for 15 min to allow for cell recovery. After recovery, the cells were transferred to a 24-well tissue culture plate containing 2 ml of prewarmed PRIME-XV medium supplemented with 25 ng/ml IL-7 and 50 ng/ml IL-15 (CD8+ T cells) or 25 ng/ml IL-7, 50 ng/ml IL-15, and 400 U/ml IL-2 (CD4+ T cells).
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4

Chitosan-based Mucin Delivery System

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Chitosan with 95% degree of deacetylation and average molecular weight 150 kDa was purchased from Heppe Medical (Germany). Mucin type II from porcine stomach, Rhodamine B, pharmaceutical grade met, and poly-L-glutamic acid were purchased from Sigma-Aldrich (USA). All other reagents were of analytical grade.
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5

Production and Characterization of Anti-DTPA Antibody

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Monoclonal antibody anti-DTPA (2C31E11C7) is produced in house (Khaw et al 2006 (link)). Poly-L-glutamic acid (Molecular weight 11,600 Da) (PGA), bicyclic anhydride of Diethylene triamine pentaacetic acid and N-hydroxysuccinimide ester of Bromoacetic acid were purchased from Sigma Aldrich (St. Louis, MO). Dulbecco’s Modified Eagle Medium (DMEM), RPMI 1640 medium, Penicillin-Streptomycin and Melphalan are purchased from Thermo Fisher Scientific. K-Blue is purchased from Neogen Corporation, KY. Fluorescein Isothiocyanate is purchased from Beckton Dickerson, NJ. Dox hydrochloride and Ptxl are purchased from LC labs (Woburn, MA). MCF7 and SKOV3, cell lines were purchased from ATCC. SKOV3 TR was produced by Dr. Duan Zhenfeng (MGH, Boston MA) (Zhenfeng et al 1999 (link)). MCF7 ADR was produced by Batist et al (1986) (link). Anti-HER2/neu affibody X anti-DTPA Fab bispecific complex was prepared as previously published (Gada et al 2012 ).
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6

Formulation and Delivery of CRISPR-Cas9 RNPs

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Cas9 and RNPs were prepared immediately before electroporation. Synthetic CRISPR RNA and trans-activating CRISPR RNA were synthesized (Dharmacon Horizon), resuspended in duplex buffer (IDT) at a concentration of 160 µM, and stored at −80°C. gRNA was formulated mixing CRISPR RNA and trans-activating CRISPR RNA 1:1 by volume and annealing at 37°C for 30 min. 15–50 kD poly-L-glutamic acid (Sigma) was resuspended in water to a concentration of 100 mg/ml, then mixed with the gRNA at a volume ratio of 0.8:1 before complexing. Cas9-NLS (University of California Berkeley; QB3 Macrolab) at 40 µM was added to gRNA/poly-L-glutamic acid at 1:1.8 volume ratio for the desired molar ratio of gRNA:Cas9-NLS of 2:1 and a final RNP concentration of 20 µM.
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7

Purification and Characterization of Lysozyme

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Two times recrystallized and lyophilized hen egg white lysozyme (hewL) was purchased from Worthington Biochemicals. We have previously characterized the purity and monomeric character of this stock material when following proper preparation. [10 (link)] To exclude presence of small fluorophores, we dissolved lyophilized hewL at 40 mg/ml in deionized water, placed it into a 6–8 kD MWCO dialysis tube, and dialyzed against 2 L of deionized water for two days with four changes of water. Lyophilized β-lactoglobulin (BLG), Poly-L-lysine hydrobromide (PLK), L-lysine, poly-L-glutamic acid (PLE), L-glutamic acid, L-cysteine, glycine, quinine sulfate, isopropanol and acetone were obtained from Sigma-Aldrich and used without further purification. Bovine serum albumin (BSA) and L-tryptophan were from MP Biomedicals. Remaining amino acids were purchased from Anaspec. All other chemicals were purchased from Fisher Scientific. Solvents and chemicals were reagent grade or better. Solutions were prepared using 18 MΩ water from a reverse osmosis unit (Barnstead E-pure).
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8

Multilayer Biomaterial Scaffold Fabrication

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Poly(L-lysine) hydrobromide (PLL), poly(ethylene imine) (PEI), poly(L-glutamic) acid (PGA) were from Sigma-Alrich (St Quentin Fallavier, France), hyaluronic acid (HA) from Lifecore medical (USA). For biological functionalization, PGA-RGD was synthesized as previously described [36 ]. PLL, HA and PEI at respectively 0.5, 1 and 2 mg/mL were dissolved in a HEPES-NaCl buffer (20 mM Hepes at pH 7.4, 0.15 M NaCl). A first layer of PEI was always deposited. All rinsing steps were performed with 0.15 M NaCl at pH ~6.5. The films were chemically crosslinked using 1-Ethyl-3-(3-Dimethylamino-propyl)Carbodiimide (EDC, final concentration of 5, 10, 30 or 70 mg/mL depending of the films) and N-Hydrosulfosuccinimide sodium salt (Sulfo-NHS, 11 mg/mL) as catalyzer, as previously described [32 (link), 42 (link)]. BMP loading in the films was done following an established protocol [31 (link), 33 (link)].
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9

CRISPR-Cas9 Mediated Gene Replacement

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For gene replacement based on HDR templates, 5 µg of plasmid DNA templates or 1 µg of ssDNA were used. For tCTS PCR templates, 0.75 µl of each gRNA (2 gRNAs in total) were premixed with 150 µg of poly-L-glutamic acid (PGA, Sigma) as previously described29 (link). 1.5 µl of TrueCut Cas9 Protein v2 (5 µg/µl, Thermo Fisher Scientific) were then added to the gRNA-PGA complexes and incubated 20 min at room temperature before addition of 750 ng of tCTS PCR template. The different RNP-HDR template complexes were then added to 1×106 cells in buffer R and electroporation was performed using the 10 µl Neon transfection System Kit (ThermoFisher Scientific) using one pulse at 1600V and 30 ms width. When needed, ZsGreen+ cells were then sorted using a FACSaria (BD Bioscience).
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10

Electrospun PCL Membranes for Anti-Inflammatory Therapy

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PCL membranes were synthesized by electrospinning as previously described [16 (link)]. PCL membranes were treated with Poly-L-lysine hydrobromide (PLL) (Sigma, St-Quentin, France) (100 µg/mL) and functionalized at the concentration of 100 µg/mL [11 (link)] with α-MSH peptide (HS-CH2CH2-Ser-Tyr-Ser-Nle-Glu-His-D-Phe-Arg-Trp-Gly-Lys-Pro-Val-COOH) (Neosystem, Strasbourg, France) covalently coupled to Poly-L-glutamic acid (PGA) (Sigma, St-Quentin, France), which leaves accessible the anti-inflammatory C-terminal sequence Lys11-Pro12-Val13 [1 (link),20 (link)]. All membranes were sterilized by 30 min exposure to UV light (254 nm, 30 W, distance 20 cm).
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