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X ray film

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X-ray film is a photographic film used to capture images from X-ray radiation. It is a sensitive medium that allows the visualization of internal structures within the body or other objects when exposed to X-rays.

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13 protocols using x ray film

1

Cytokine Profile Analysis Using Antibody Array

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Cytokine profiling of the cells was performed using the Human Inflammation Antibody Array- Membrane (Abcam product#ab134003). This array analyses human protein samples for 40 different inflammatory cytokines. Array membranes, were incubated for 30 min in 2 ml of blocking buffer supplied with the kit. Following this, they were further incubated for 60 min at room temperature with 200µg of protein from each cell sample. One ml of Biotin-conjugated Anti-Cytokines were then added to each membrane after a thorough wash. This was succeeded by an overnight incubation at 4°C and then incubated with a 1:2000 dilution of HRP-Conjugated Streptavidin for 60 min at room temperature. The proteins were detected by chemiluminescence western blot and signals were captured on x-ray films (Denville Scientific, MA, USA), scanned at high resolution, and quantified using ImageJ software.
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2

Quantitative Western Blot Analysis

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Frozen tumor and breast tissue were weighed, mechanically dissociated and lysed in M-PER solution followed by protein quantification using standard Bradford assay. 40 μg protein was electrophoresed on a 15% SDS-polyacrylamide gel (Bio-Rad Hercules, CA), transferred to a PVDF membrane (Millipore, Billerica, MA), blocked in 3% Bovine Serum Albumin (Sigma Aldrich, St. Louis, MO, Catalog #A7030) overnight and probed with rabbit anti-mouse primary antibodies against α-Lactalbumin (U.S. Biologicals, Salem, MA, Catalog #037664). Mouse anti-human β-Actin primary antibody (Proteintech, Rosemont, IL, Catalog #60008-1) was probed on the same blot as loading and protein expression control. Primary antibody binding was detected using HRP conjugated goat anti-rabbit (Santa Cruz Biotechnologies, Dallas, TX) or anti-mouse secondary antibodies (Promega) followed by detection of chemiluminescence on X-Ray films (Denville Scientific, Holliston, MA). Intensity of specific protein bands was quantified using the Image Studio software (LI-COR, Lincoln, Nebraska) and normalized to intensity of β-Actin control bands.
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3

Western Blot Analysis of Neu and GAPDH

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Cells and tissues were lysed in triton lysis buffer (25 mM sodium phosphate, 150 mM sodium chloride, 1% Triton X-100, 5 mM EDTA, 50 mM sodium fluoride, 1 mM sodium vanadate, 1 mM phenylmethylsulfonyl fluoride, 5 μM pepstatin A, 10 μg/ml aprotinin, 10 μg/ml leupeptin, 25 μM phenylarsine oxide) for 30 min at 4 °C. Aliquots of 50 micrograms in Laemmli buffer were heated in boiling water for 5 min, electrophoresed on 10% polyacrylamide gels, and transferred to PVDF membranes (Biorad, Hercules, CA). The membranes were treated for one hour at room temperature with blocking buffer (5% milk proteins, 0.05% Tween 20 in Tris buffer, pH 8.1) and hybridized overnight in the same buffer containing 1:500 dilutions of rabbit anti-Neu (SC-284) and rabbit anti-GAPDH (SC-25,778) (both antibodies from Santa Cruz Biotechnology, Santa Cruz, CA). The membranes were washed 3 times for 5 min with 0.05% Tween-20 in Tris-Cl, pH 8.1 and probed with a 1:2000 dilution of goat anti-rabbit IgG-HRP (Santa Cruz Biotechnology, SC-2004) in blocking buffer for 1 h at room temperature. The membranes were then washed 3 times for 10 min in 0.05% Tween 20 in Tris buffer, pH 8.1 and incubated with ECL Western blot Substrate (ThermoFisher, Grand Island, NY, Catalog Number 32106) for 1 min before being exposed to X-ray films (Denville Scientific, Holliston, MA, Catalog Number E3012) for 5–10 min and developed.
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4

Quantitative Western Blot Analysis of Retinal Proteins

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Individual dissected posterior eyecups were lysed in 160 μL of HNTG detergent buffer (50 mM HEPES, pH 7.4, 150 mM NaCl, 10% glycerol, 1.5 mM MgCl2, 1% Triton X-100) freshly supplemented with 1% protease and phosphatase inhibitor cocktails (#P8340, Sigma-Millipore, and #78420, Thermofisher, respectively). Cleared lysates representing equal eyecup tissue fractions were separated on 12% SDS polyacrylamide gels using a standard Tris–glycine buffer system (Novex gels and solutions, Thermofisher). Proteins were transferred to nitrocellulose membranes (#88018, Thermofisher) for immunodetection with primary and appropriate horseradish peroxidase (HRP)-conjugated secondary antibodies. The primary antibodies used were porin (#4866, Cell Signaling, 1:5,000), RhoA (#sc-179, Santa Cruz Biotechnologies, Santa Cruz, CA, USA, 1:200), rhodopsin (clone B6-30, 0.01 μg/mL), and α-tubulin (#9099, Cell Signaling, 1:5,000). The secondary antibodies used were donkey-anti-rabbit IgG-HRP (#16029, Thermofisher, 1:10,000) and donkey-anti-mouse IgG-HRP (#16011, Thermofisher, 1:5,000). Chemiluminescence reaction signals from ECL-plus substrate (#NEL105001EA, Perkin-Elmer, Shelton, CT, USA) were captured with X-ray films (#3018, Denville Scientific, Swedesboro, NJ, USA), which were scanned and quantified by densitometry using Image QuantTM TL 7.0 (GE Healthcare, Chicago, IL, USA).
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5

Western Blot Protein Detection with GSI Treatment

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Cells treated with or without GSI at various doses were lysed in Lysis buffer (20 mM Tris pH 7.5/150 mM NaCl/12 mM EDTA/10% glycerol/1% Triton X-100) containing a protease inhibitor cocktail (Roche Applied Science, Indianapolis, IN) and PhosphoStop (Roche Applied Science, Indianapolis, IN). The protein concentration was measured using a Bio-Rad Protein Assay (Bio-Rad, Hercules, CA). Fifty μg of protein was mixed with an equal volume of 2x SDS loading buffer (Invitrogen, Carlsbad, CA) and boiled for 5 min before applying the sample to SDS-PAGE. After SDS-PAGE, the protein gel was blotted on a nitrocellulose membrane Hybond C extra (Amersham Biosciences, Pittsburgh, PA) using a Bio-Rad blotting apparatus (BioRad, Hercules, CA) for one hour. The blot was blocked with 5% dry milk in TBST for one hour, washed twice in TBST, and then incubated with antibodies (1∶1000) in 5% BSA at 4°C overnight. The blot was washed three times in TBST and then incubated with peroxidase-conjugated secondary antibody (Jackson ImmunoResearch, West Grove, PA) in 5% dry milk at room temperature for 1 hour. After washing three times in TBST, the blot was incubated for 5 minutes with SuperSignal West Pico Chemiluminescent Substrate (Pierce, Rockford, IL) and X-ray film (Denville Scientific, Metuchen, NJ) was then developed.
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6

Mammalian Cell Culture Reagents

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Penicillin/Streptomycin 100X solution and Dulbecco’s Modified Eagle Medium (DMEM) were obtained from Mediatech (Manassas, VA, USA). Fetal bovine serum (FBS) and cosmic calf serum (CCS) were purchased from Hyclone (Logan, Utah, USA). The ProFection® Mammalian Transfection System kit for calcium phosphate transfections and the trypsin used in enzymatic digests prior to LC-MS/MS analysis were from Promega (Madison, WI, USA). Protein G resin was obtained from G-Biosciences (St. Louis, MO, USA). Protein A resin and enhanced chemiluminescence (ECL) reagents were purchased from Pierce (Rockford, IL, USA), and x-ray film was from Denville Scientific (Metuchen, NJ, USA). Packing material used for HPLC was 5 μm C18-coated silica beads, 200 Å pore size, purchased from Michrom Bioresources Inc. (Auburn, CA, USA). Nitrocellulose membranes were from GVS Life Sciences (Sanford, ME, USA). All additional reagents were purchased from Sigma (St. Louis, MO, USA) unless otherwise noted.
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7

Western Blot Analysis of Cortical Proteins

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Mouse cortices were homogenized in RIPA buffer. Protein concentration was measured by Bradford assay (BioRad). Equal amounts of protein were run on 12% SDS-polyacrylamide gels and transferred to a nitro-cellulose membrane (BioRad). The next steps in order were: block 2 hours at room temperature; probe with primary antibody overnight at 4°C; incubate secondary antibody for 1 hour at RT; addition of substrate for 3 minutes; protein bands detected with x-ray film (Denville Scientific). Films were analyzed densitometrically using Image J. Two normalized values (for the same sample) from different blots were averaged to give the values presented.
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8

Cellular Protein Extraction and Fractionation

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Total cellular protein was extracted from cell lysates by homogenization with RIPA buffer (Cell Signaling Technology, Danvers, MA); subcellular fractionation was performed using NE-PER nuclear-cytoplasmic fraction kit (Thermo Scientific). Protein samples were loaded into 4%-15% SDS-polyacrylamide gels (Bio-Rad, Hercules, CA) and subjected to electrophoretic analysis and blotting. Membranes were subsequently incubated with the Amersham ECL Plus Western Blotting Detection System (Amersham, GE Healthcare, Buckinghamshire, UK) and auto-radiographed using X-ray film (Denville Scientific, South Plainfield, NJ). Protein expression bands were normalized to GAPDH expression.
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9

Hydrogel-Encapsulated Cell Protein Analysis

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For analyzing cells encapsulated in hydrogels, the hydrogels were degraded by incubation with 1 mg/mL collagenase I (Worthington) solution for 40 min and the released cells were pelleted by centrifugation. Cells were homogenized in NP-40 lysis buffer supplemented with protease inhibitor (Sigma-Aldrich P2714) and phosphatase inhibitor cocktails (Cell Signaling Technology 5870S). The lysate was centrifuged at 10 000g for 10 min. The supernatant was stored at –80 °C until further analysis and the pellet was resuspended in RIPA buffer. Equal total protein amount samples, as measured by micro BCA, were loaded on SDS-PAGE gels. The separated proteins were transferred onto nitrocellulose membranes, blocked using 5% bovine serum albumin dissolved in tris-buffered saline with 0.1% Tween-20 (BSA-TBST) at RT for 1 h, incubated with primary antibody at 4 °C overnight, washed with TBST three times for 10 min each, incubated with 1:5000 v/v horseradish peroxidase-conjugated secondary antibody (Bio-Rad) at RT for 1 h, washed three times for 10 min each, incubated with the substrate ECL (Denville Scientific) or ECL Prime (GE) and then exposed to an X-ray film (Denville Scientific). The films were scanned at 600 dpi resolution and obtained bands were quantified by densitometry analysis in ImageJ (NIH). Information on antibodies used is provided in Table S2.
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10

Western Blot Analysis of Cellular Extracts

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Whole cell extracts (WCE) were prepared by lysing cells with lysis buffer (150mM NaCl, 10mM Na2HPO4, 1% Triton-X, 0.5% deoxycholic acid, 0.1% sodium dodecyl sulfate (SDS), and 0.2% sodium azide; pH 7.4). Nuclear and cytoplasmic extracts were prepared using a nuclear extraction kit (Active Motif) according to manufacturer’s protocol. Cell lysates were electrophoretically separated on SDS-polyacrylamide gels then transferred to polyvinylidene difluoride (PVDF) membranes (Thermo Fisher Scientific) and probed with primary antibodies. After overnight incubation at 4°C, membranes were washed and incubated at room temperature with horseradish peroxidase-conjugated secondary antibody (CalBiochem) and subsequently incubated in chemiluminescent HyGlo reagent and visualized by exposure to x-ray film (Denville Scientific). Quantification of Western blot signals was conducted by densitometric analysis with Image J software [47 (link)]. Relative density of each treatment signal band was normalized to untreated control signal band. Subsequently, normalized relative density of signals was further adjusted by normalization to relative density of loading control signal bands.
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