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12 protocols using b7651

1

Isolation and Culture of Cardiac Fibroblasts

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Human cardiac fibroblasts were prepared as follows: right atrial biopsies were weighed, minced into 1–2 mm3 pieces, and placed in 6-cm dishes. Human cardiac fibroblasts were grown and maintained in DMEM (11995- 065, Gibco) supplemented with 20% fetal bovine serum (FBS, 10500, Hyclone) and 1% penicillin–streptomycin (15140-122, Gibco), in a humidified atmosphere at 37 °C and 5% CO2. The medium was renewed every 2–3 days. At 80–90% confluence, cells were passaged using standard trypsinization techniques. This protocol was also used to isolate fibroblasts from mouse atria, ventricles and kidneys. Human primary kidney fibroblasts (H-6016; CellBiologics) were cultured in specific medium (M2267, CellBiologics). All experiments were carried out at low cell passage (< P4) and cells were cultured in serum-free media for 16 h before treatment.
Antibodies and inhibitors used in this study were as follows: IgG type 2a (MAB003, R&D Systems), anti-IL-11 antibody (MAB218, R&D Systems), anti- IL11RA antibody (MAB1977, R&D Systems), brefeldin A (B7651, Sigma-Aldrich), cycloheximide (C1988, Sigma-Aldrich), PD98059 (9900, Cell Signaling), and U0126 (9930, Cell Signaling).
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2

Cell Death Induction in N. benthamiana

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Four-week-old N. benthamiana plants were infiltrated with A. tumefaciens carrying the constructs of interest. One day after A. tumefaciens infiltration, the same leaves were infiltrated with 30 μg/mL Brefeldin A (BFA; B7651, Sigma; ER stress/cell death inducer), 20 μg/mL tunicamycin (TM; ab120296, Abcam; ER stress/cell death inducer), or 0.2% DMSO (mock treatment).
The extent of cell death was measured quantitatively by monitoring electrolyte leakage. Four leaf discs (diameter, 1 cm) of infiltrated leaves were punched out for each sample immediately after BFA/TM/DMSO infiltration (at 1 dpi of A. tumefaciens infiltration). Then, the leaf discs were placed in a 12-well plate containing 5 mL of distilled water per well for 1 h to remove ions released by sampling-related injury. After washing, the leaf discs were carefully transferred to a fresh 12-well plate containing 5 mL of distilled water per well, which was incubated in a growth chamber for 24 h. Conductivity measurements were taken with ORION STAR A212 conductivity meter (Thermo Scientific) 24 h after treatment.
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3

Cell Proliferation Dye and Brefeldin A

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Cells were labeled with 5 μM cell proliferation dye (CPD) eFluor 670 (#65-0840, eBiosciences) and cultured with or without brefeldin A (BFA, 100ng/ml, B7651, Sigma) for 2 days and analyzed via FACS.
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4

Inducing ER Stress in Zebrafish Embryos

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Chemical induction of ER stress in zebrafish embryos was accomplished by using a final concentration of 0.5 mM DTT (NEB #B1034S; Invitrogen Y00147), 1 µM thapsigargin (Sigma-Aldrich #T9033), 1 µg/ml tunicamycin (Sigma-Aldrich #T7765), and 5 µM brefeldin A (Sigma-Aldrich #B7651) in 10 ml phenylthiourea (PTU) in a 16 mm×50 mm Petri dish. For heat stress, Petri dishes containing embryos in 5 ml PTU and sealed using parafilm were incubated in a water bath set to 39°C for 1 h.
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5

BFA and Beta-estradiol Induction Protocol

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BFA (Sigma-Aldrich B7651) was solubilized in DMSO to 50 mM stock concentration and added to liquid ½MS media for treatments. Beta-estradiol (Sigma-Aldrich E8875) was solubilized in 100% ethanol to 5 mg/mL stock concentration and added to ½MS media during preparation of solid media to a final concentration of 2.5 µg/mL. Induction of XVE»amiCHCa was performed approximately 48 hr before CLSM imaging by transferring 3-day-old seedlings to media supplemented with Beta-estradiol.
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6

Brefeldin A-induced Organelle Dynamics

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Leaves transiently expressing each construct 48 hr post-agroinfiltration were infiltrated with a dH 2 O solution of Brefeldin A at a concentration of 50 µg / mL (B7651 SIGMA); from a DMSO stock solution; for 3 hr before observation. Mock conditions contain the same volume of DMSO alone. Leaves were then observed with a Zeiss LSM 880 confocal fluorescence microscope with an oil-immersion 63x lense using the appropriate excitation wavelengths for each fluorescent fusion proteins.
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7

Cell Proliferation Dye and Brefeldin A

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Cells were labeled with 5 μM cell proliferation dye (CPD) eFluor 670 (#65-0840, eBiosciences) and cultured with or without brefeldin A (BFA, 100ng/ml, B7651, Sigma) for 2 days and analyzed via FACS.
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8

In Vivo Cytokine Induction by Anti-CD3 Antibody

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Mice were injected intraperitoneally with antibody to CD3 as described above at day 0 and again 48 h later. Mice received intraperitoneal brefeldin A (4 mg kg−1)43 (link) (Sigma-Aldrich; catalog B7651) together with the second anti-CD3 injection. Mesenteric lymph nodes were harvested 4 h later and processed for intracellular cytokine staining using the eBioscience ICS kit and protocol (catalog 00-5123-43 and 00-5233-56). Before fixing cells, an aliquot was separated for isolating CD4+ lymphocytes for RNA extraction. Cells used for intracellular cytokine staining were stained with PECy5-conjugated rat anti-mouse CD4 antibody (eBioscience; 15-0042-83) before fixing and permeabilizing. Antibodies used for flow cytometry were PE-conjugated rat anti-mouse IFNγ antibody (BD Biosciences; catalog 554412), PE-conjugated rat anti-mouse FOXP3 antibody (eBioscience; catalog 12-5773-80) and APC-conjugated hamster anti-mouse CTLA4 antibody (eBioscience; catalog 17-1522-80). Samples were analyzed with a BD LSR-II flow cytometer (BD Biosciences) and cytometry software FlowJo 7.5 (FlowJo, LLC, Ashland, OR, USA).
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9

Bladder Smooth Muscle Cell Culture

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Smooth muscle cells were isolated from cystectomized human bladders as described [4 (link)],[24 (link)]. Cells in passages 2–6 were cultured in DMEM/Ham’s F12 supplemented with antibiotics (penicillin and streptomycin) and 10% fetal calf serum (FCS). The cells were treated for 24h with the following agents: 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD, 0.16 μM 48599, Sigma Aldrich), forskolin (10 μM, F6886, Sigma Aldrich), brefeldin A (5 μg/ml, B7651 Sigma Aldrich), tunicamycin (5 μg/ml, T7765, Sigma Aldrich), Phorbol 12-myristate 13-acetate (PMA, 1μM, P8139, Sigma Aldrich) or fetal calf serum (FCS). Cells were harvested and RNA isolated as described above. MiR-132 and miR-212 inhibitors (AM10166, AM10340, Ambion, Thermo Scientific, Pittsburgh, PA, USA; 10 nM and 100 nM), mimics (Mission miRNA: Sigma-Aldrich, St. Louis, MO, USA; 10 and 100 nM) and negative control (HMC0002, Mission miRNA: Sigma-Aldrich, St. Louis, MO, USA; 10 and 100 nM) were transfected using Oligofectamine reagent (Life Technologies). Successful transfection of miR-132/212 mimics and inhibitors was confirmed using real-time quantitative PCR. Experiments with human cells are from 3–7 independent replicates using cells from both males and females.
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10

Vg9Vd2-T Cell Cytotoxicity Assay

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Vg9Vd2-T cell lines were incubated with the bispecific Vg9Vd2-T cell engager or medium control for 30 minutes at 37 C. Subsequently, Vg9Vd2-T cells were cocultured with Jeko-1 cells for 4 hours in a 1:1 ratio in the presence of Brefeldin A (10 mg/mL; B7651, Sigma-Aldrich), GolgiStop (554724, BD Biosciences) and anti-CD107a (Supplementary Table ).
In the assays with autologous Vg9Vd2-T cells, CLL PBMCs were partially depleted of CD19 þ cells using magnetic beads (Miltenyi Biotec; after depletion AE50% of cells were CD19 þ ) and then cultured overnight with the bispecific Vg9Vd2-T cell engager or medium control in the presence of Brefeldin A, GolgiStop, and anti-CD107a.
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