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24 protocols using mitotracker red cmxros

1

Mitochondrial Morphology Imaging in HT22 Cells

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HT22 cells were treated for 40 min with 50 nM MitoTracker Red CMXRos (Yeasen, China), then mitochondrial morphology was observed by confocal laser microscope (Olympus, Japan; FV1000).
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2

Ferroptosis Induction and Detection

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atRAL, Fer-1 (catalog no. SML0583), DFO (catalog no. D9533), 4',6-diamidino-2-phenylindole (DAPI) and Hoechst 33342 were purchased from Sigma-Aldrich (Saint Louis, MO, USA). 2',7'-dichlorodihydrofluorescein diacetate (H2DCFDA) and BODIPY 581/591 C11 (C11-BODIPY) were obtained from ThermoFisher Scientific (Eugene, OR, USA). Mitotracker Red CMXRos and TRIeasy total RNA extraction reagent were obtained from Yeasen (Shanghai, China). Antibodies against COX2 (catalog no. 12282S), SLC7A11 (catalog no. 98051S), cleaved caspase-3 (catalog no. 9664S and 9661S), and GAPDH (catalog no. 5174S) were provided by Cell Signaling Technology (Danvers, MA, USA). Anti-GPX4 (catalog no. ab125066), anti-ACSL4 (catalog no. ab155282), and anti-acrolein (catalog no. ab48501) were purchased from Abcam (South Cambs, England, UK). Anti-γH2AX (catalog no. 05-636) was purchased from Millipore (Billerica, MA, USA). Anti-γH2AX (catalog no. NB100-384) was provided by Novus Biologicals (Littleton, CO, USA).
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3

Apoptosis and Mitochondrial Analysis

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An Annexin V-FITC Kit (Beyotime, C1062) was used to detect the apoptotic cells. For determining mitochondrial membrane potential (MMP) and analyzing ROS production, cells were stained using the TMRE Mitochondrial Membrane Potential Assay Kit (Abcam, Cambridge, UK, ab113852) and MitoTracker® Red CMXRos (Yeasen, 40741ES50) and analyzed by flow cytometry (FACSCanto, BD) within 1 h.
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4

Mitochondrial Transfer Visualization

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For the mitochondrial transfer study, MitoTracker fluorescent probes were used to label active mitochondria in cells. hUC‐MSCs were grown to 80% confluence, washed with PBS to remove any residual platelet lysate, before staining and pre‐staining with 200 nm of MitoTracker Red CMXRos (40741ES50, Yeasen, China) in 10 mL of serum‐free α‐MEM; this was then incubated in darkened conditions for 45 min. Then, cells were washed five times with PBS, replaced with fresh serum‐free α‐MEM, and MSC‐EVs were extracted, as described previously.
The mitochondria of rPACs were stained with 200 nm MitoTracker Green FM (40742ES50, Yeasen, China) for 45 min. Cells were twice with PBS to remove excess dye; then, the MSC‐EVs (50 µg mL−1) labeled with MitoTracker Red CMXRos were added and incubated for 6 h to allow EVs to internalized. After two washes with ice‐cold PBS, mitochondrial transfer was observed and photographed using an inverted confocal microscope (LSM780, Carl Zeiss, Germany) in the same Z‐axis plane (63×, oil lens).
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5

Autophagy Regulation in Cell Assays

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Opti-MEM (31985088) was purchased from Gibco. MitoTracker Red CMXRos (40740ES50) was purchased from YEASEN. DAPI (C1002) and N-acetylcysteine (S0077) were purchased from Beyotime. 3-methyladenine (3-MA) (S2767) and bafilomycin A1 (Baf-A1) (S1413) were purchased from Selleck Chemicals. CCCP (C2759) (SAB5701328) was purchased from Sigma-Aldrich. Anti-Occludin (91131S), Claudin-1 (13255S), GAPDH (5174S), Parkin(2132S), and β-actin (3700S) were purchased from Cell Signaling Technology. Anti-P62 (T55546), ATG5 (T55766), and LC3B primary antibodies were purchased from Abmart.
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6

Mitochondrial Staining with MitoTracker

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Mitochondrial staining was conducted with the mitochondrial probe MitoTracker Red CMXRos (Yeasen, Shanghai, China) according to the manufacturer's protocols. Briefly, cells were incubated with CMXRos (500 nM) at 37°C in an incubator for 30 min. After washing with PBS, the cells were counterstained with DAPI for 10 minutes and imaged with an Olympus BX63 microscope (Olympus, Japan).
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7

Mitochondrial Oxidative Stress Evaluation

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4T1 cells were treated by PBS, OxPt [40 µm], Mito‐FFa [8 µm], and FF [80 µm] for 6 h. The treated 4T1 cells were incubated with MitoTracker Red CMXRos (Yeasen, China) at 37 °C for 45 min and cells were next fixed with cold methanol at ‐20 °C for 10 min and permeabilized with 0.1% Triton X‐100. Then, 4% paraformaldehyde was used to refix cells at RT for 10 min, and NaOH solution ([50 mm] in 50% ethanol) was added to denature DNA. After washed by PBS three times, cells were blocked with 1% BSA/PBS, and incubated with an FITC‐8‐hydroxyguanine antibody (bs‐1278R‐FITC, Bioss) at 4 °C for 1 h. Then, nuclei were stained with DAPI (Beyotime, China). Finally, cells were observed with Olympus FV3000 LSCM.
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8

Imaging Subcellular Organelles in Transfected SUVECs

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SUVECs were seeded on the glass coverslips of the 35 mm diameter cell culture dishes and cultured to 20–30% confluency. Then, SUVECs were transfected with pEGFP-C1 or pEGFP-NS4A. The cells were further cultured for 36 h. Then, the cells were washed three times and were incubated with 1 μM ER-tracker Red (Beyotime, China) for 30 min at 37°C or incubated with 200 nM Mito-Tracker Red CMXRos (Yeasen, China) for 45 min at 37°C and washed with PBS for three times. Then, the cells were fixed with 4% paraformaldehyde for 20 min at room temperature and incubated with Hoechst 33342 for 10 min at room temperature. After three washes with PBS, cells were observed by laser scanning confocal microscopy (LSM510 META; Zeiss, Germany). ER-tracker Red is a red fluorescent probe of ER and used for marking the location of intracellular ER. Mito-Tracker Red CMXRos is a red oxidized fluorescent dye of mitochondria and used for marking the location of intracellular mitochondria. Hoechst 33342 is a blue fluorescent dye of nuclear DNA and used for marking the location of cell nucleus.
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9

Mitochondrial Staining of Cell Cultures

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In confocal culture dishes, cell cultures were removed after 24 h and stained with MitoTracker Red CMXRos (YEASEN, 40740ES50, China). The staining working solution was obtained by diluting the storage solution with the cell culture solution to 200 nM and pre‐warmed at 37°C for 40 min. After staining, the above staining solution was replaced with a fresh culture medium, and the confocal dish was placed under a fluorescence microscope for observation.
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10

Mitochondrial Dysfunction Evaluation

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Cells were cultured and treated with tyrosol as described above. Mitochondrial membrane potential and ROS were stained using MitoTracker Red CMXRos and MitoSOX Red Mitochondrial Superoxide Indicator (both from Yeasen Biotech, China), respectively. Cells were labeled with MitoTracker Red CMXRos (final concentration, 100 nM) or MitoSOX Red (final concentration, 3 μM) at 37°C for 30 min. The cells were then fixed with 4% paraformaldehyde for 15 min, followed by nuclei staining using DAPI (Beyotime). Images were taken with DMI6000B (Leica) and fluorescence intensity was measured using ImageJ software. The results were expressed as the mean of relative fluorescence intensity per cell.
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