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3 protocols using non immune goat serum

1

Immunohistochemical Analysis of Decalcified Femurs

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Formalin-fixed femurs were processed as previously described (14 (link)). Briefly, bones were decalcified, embedded in paraffin, and sectioned on a rotary microtome at 4 μm. Sections were placed on adhesive slides, deparaffinized, and submitted to antigen-retrieval protocols (Supplementary Table 2). Following pretreatments, standard avidin-biotin complex staining steps were performed at room temperature using a Dako Autostainer. After blocking nonspecific protein with nonimmune goat serum (Vector Laboratories, Burlingame, CA), sections were incubated with an avidin (Vector Laboratories)/biotin (Sigma-Aldrich) blocking system. Sections were incubated with antibodies (Supplementary Table 3) followed by R.T.U. VectaStain Elite ABC Reagent (Vector) and were developed with NovaRED (Vector Laboratories) followed by counterstain in Gill 2 hematoxylin (Richard Allen, Kalamazoo, MI). Slides then were dehydrated, cleared, and placed on a slide under a coverslip with Flotex Permount mounting media.
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2

Immunofluorescence Staining of PTGFR

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After antigen retrieval with 10 mM sodium citrate (pH 6), slides were blocked with 5% non-immune goat serum (Vector Laboratories, Burlingame, CA) in PBS containing 0.1% Triton; all antibody solutions were made in this blocking buffer. Slides were incubated for 1 hour at room temperature either with primary antibody generated against PTGFR (5 μg/ml; Cayman) or no primary antibody, followed by incubation with Alexa Fluor 488-conjugated anti-rabbit secondary antibody (4 μg/ml; Molecular Probes, Eugene, OR). The slides were treated with 1% Sudan Black in 70% methanol to reduce autofluorescence and coverslipped in Vectashield medium containing propidium iodide (Vector). In some experiments, the anti-PTGFR primary antibody was pre-incubated with the blocking peptide at a 1:2 ratio prior to use in the primary antibody incubation step.
Conventional fluorescence images were obtained using an Olympus BX41 fluorescent microscope fitted with a DP70 digital camera and associated software (Olympus, Melville, NY). Confocal laser microscopy was performed using a Zeiss 510 laser scanning confocal microscope with LSM5 software for image acquisition (Carl Zeiss Inc., Thornwood, NY) using 488 nm excitation with a 505/550 band pass filter (green channel) and 543 nm excitation with a 560 nm long pass filter (red channel).
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3

ALP and Nitrotyrosine Immunohistochemistry

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Tissue sections were stained with hematoxylin and eosin. For ALP activity staining, the sections were stained with 0.1% naphthol AS-MX phosphate (Sigma-Aldrich) and 0.1% fast blue BB salt (Sigma-Aldrich) in 0.1 M Tris-buffer (pH 9.2) at 37 °C for 30 min14 (link). Immunohistochemistry with anti-nitrotyrosine antibody was performed as described previously14 (link). The sections were quenched with 0.3% H2O2 in PBS for 60 min and blocked with 10% non-immune goat serum (Vector Laboratories) for 30 min. Then, the samples were incubated with anti-nitrotyrosine antibody (1:100; Millipore) at 4 °C overnight. Next, the sections were incubated with a biotinylated antibody (1:200; Vector Laboratories) for 45 min, followed by avidin-biotin complex (1:100; Vector Laboratories) for 60 min. The sections were reacted with 0.02% 3,3″-diaminobenzidine tetrahydrochloride (Dojindo Laboratories) and 0.06% H2O2 in 0.05 M Tris buffer, pH 7.6 and counter-stained with hematoxylin. Immunohistochemical controls were incubated with non-immune rabbit IgG (Vector Laboratories) instead of the primary antibody. The sections were observed under an Axio Imager M2 microscope.
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