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Anti calnexin

Manufactured by Merck Group
Sourced in United States

Anti-calnexin is a monoclonal antibody used as a research tool in cell biology laboratories. It specifically binds to the calnexin protein, which is involved in the quality control of protein folding in the endoplasmic reticulum. Anti-calnexin can be used to detect and study the expression and localization of calnexin in various cell types and experimental conditions.

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30 protocols using anti calnexin

1

Quantification of STING Localization

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Images of the cells stained with anti-STING (D2P2F) (Cell signaling, 13647S), anti-Calnexin (Millipore Sigma, MAB3126) and anti-TGN46 (Proteintech, 66 477–1-Ig) were used for quantitative evaluation of the localization of STING to either the ER or the Golgi. Images were binarized, then the surface area of the total STING signal or the localized signal to the corresponding organelle were measured. The ratio of the localized area to the total STING area was determined from at least 10 images. Data were represented as means ± SEM, and P-values were on the basis of unpaired, two-tailed Student’s t-tests.
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2

Quantifying STING Subcellular Localization

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Images of the cells stained with anti-STING (D2P2F) (Cell signaling, 13647S), anti-Calnexin (Millipore Sigma, MAB3126) and anti-TGN46 (Proteintech, 66477-1-Ig) were used for quantitative evaluation of the localization of STING to either the ER or the Golgi. Images were binarized, then the surface area of the total STING signal or the localized signal to the corresponding organelle were measured. The ratio of the localized area to the total STING area was determined from at least 10 images. Data was represented as means ± SEM, and P values were based on unpaired, 2-tailed Student's t-tests.
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3

Western Blotting Procedure for Protein Analysis

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Western blot analysis was conducted as previously described (Timper et al., 2017 (link)). In brief, membranes were blocked with 10% WB-blocking reagent (Roche, Switzerland) in Tris-buffered saline containing 0.1% Tween-20 (TBS-T), and incubated with primary antibodies, made up in TBS-T (0.1% Tween-20) and 5% Western Blotting-Reagent, at 4°C overnight. The following primary antibodies and dilutions were used: anti-GLP-1R (1:1000, #NBP1-97308, Novus Biologicals), anti-Akt (#4686, Cell Signaling), anti-p-Akt(S473) (#4060, Cell Signaling), anti-NDUFA9 (1:1000, #459100, Invitrogen), anti-NDUFB8 (1:1000, #459210, Invitrogen), anti-Complex II 70 kDa Fp Subunit (1:1000, #459200, Invitrogen), anti-UQCRC1 (1:1000, #459140, Invitrogen), anti-Complex IV (1:1000, #459110, Invitrogen), anti-ATP synthase subunit β (1:1000, #21351, Invitrogen), anti-p-Ser-226-GLUT-1 (#ABN991, Merck Millipore), anti-GLUT-1 (#07-1401, Merck Millipore), anti-FGF21 (#AF3057, R&D Systems) and, as loading control: anti-calnexin (1:4000, #208880, Merck Milipore). Quantification of chemiluminescent signals was performed with the ImageJ (Fiji)-software package (Schneider et al., 2012 (link)).
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4

Western Blot Analysis of GLT-1a and xCT

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Proteins were separated using 10% SDS-PAGE and transferred to PVDF membrane. The membranes were probed overnight at 4°C with primary antibodies diluted in 5% milk/Tris-buffered saline with 0.1% Tween-20. Anti-GLT-1a antibody (generous donation from Paul Rosenberg, Harvard University) was used at a dilution of 1:80,000 and anti-xCT (Novus) was used at a 1:5,000 dilution. After incubation with HRP-conjugated secondary antiserum (Jackson Immuno; 1:10,000–1:50,000), immunoreactive bands on the membranes were detected by enhanced chemiluminescence (ECL Plus; GE Healthcare Bio-Sciences). Band density was measured using NIH ImageJ software. Blots were re-probed with anti-calnexin (Millipore, 1:40,000) as a loading control.
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5

Western Blot Analysis of Cellular Protein Markers

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Cells were lysed in RIPA buffer (20 mM HEPES pH7, 150 mM NaCl, 1% deoxycholate, 1% Nonidet P-40, 0.1% SDS, 1 mM Na2VO4, 2 mM EDTA, and a complete protease inhibitor mixture; Roche). Samples were resolved on NuPage Novex Bis-Tris gels (Invitrogen) and blotted with the following antibodies: anti-p53 (IMX25; Leica Microsystems), anti-Rpl22l1, anti-EIF2α (5324S, Cell Signaling), anti-phospho-EIF2α (9721S, Cell Signaling), anti-calnexin(31 (link)), and anti-GAPDH (6C5; Millipore) (32 (link)).
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6

Optimization of Western Blot Analysis

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Western blot analysis was performed as previously described (Gorvin et al. 2018d (link)). Endogenous calnexin was used as a loading control. Lysates were resuspended in Laemmli buffer, boiled and separated on 6% SDS-PAGE gels. Following transfer to polyvinylidene difluoride membrane (ThermoFisher), blots were blocked in 5% marvel/TBS-T, then probed with anti-CaSR (ADD, Abcam), anti-Gα11 (SantaCruz Biotechnology), anti-Gα12 (SantaCruz), and anti-calnexin (Millipore) antibodies. Blots were visualised using the Immuno-Star WesternC kit (BioRadK) on a BioRad Chemidoc XRS+ system. For cell surface expression of CaSR, plasma membrane fractions were extracted using the Plasma Membrane Protein Extraction kit (Abcam). Plasma membrane calcium adenosine triphosphatase (PMCA1) (Abcam) was used as a housekeeping protein for the plasma membrane fraction.
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7

Western Blot Analysis of Gα11 Expression

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Following flow cytometry analysis, cells were pelleted and used for Western blot analyses. Flow cytometry cells and lymphoblastoid cells were lysed in NP40 lysis buffer (50 mM Tris HCl pH 7.4, 1 mM EDTA, 150 mM NaCl, protease inhibitors), resuspended in Laemmli buffer, boiled, and separated on 12% sodium dodecyl sulfate‐polyacrylamide gel electrophoresis (SDS‐PAGE) gels. Following transfer to polyvinylidene difluoride membrane (Amersham), blots were blocked in 5% nonfat milk/TBS‐T, then probed with primary antibodies. The following antibodies were used for Western blot analysis: anti‐calnexin (1:1000, Millipore, AB2301), anti‐Gα11 (1:1000, SantaCruz, sc‐390382), and anti‐GFP (1:1000, SantaCruz, sc‐9996). Blots were visualized using Immuno‐Star WesternC kit (BioRad) on a BioRad Chemidoc XRS+ system. Blots were stripped with Restore Western blot stripping buffer (Thermo Fisher Scientific) and blocked in 5% marvel/TBS‐T between probing with each primary antibody. Densitometric analysis was performed using ImageJ analysis software (version 1.46; rsb.info.nih.gov/ij/), and statistical analyses were performed using one‐way ANOVA with Dunnett's multiple comparisons test.(6 (link)
) Expression levels of Gα11 were normalized to calnexin expression and expressed relative to the mean relative density of the three unaffected cell lines.
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8

Cell Surface Biotinylation and TRPV1 Detection

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Cells were transfected with 2 µg of each construct. Control
experiments were performed by transfecting the empty vectors. Forty-eight hours
after transfection, cells were subjected to cell-surface biotinylation and
precipitated after lysis with neutravidin–agarose beads (Pierce Rockford, IL,
USA) as described in.21 (link) Anti-TRPV1 antibody (1/500, Santa Cruz)
and anti-calnexin (1/2000, Millipore) were used.
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9

Western Blot Analysis of Mitochondrial Proteins

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Western blot analysis was conducted as previously described (Timper et al., 2017 (link)). In brief, membranes were blocked with 10% WB-blocking reagent (Roche, Switzerland) in Tris-buffered saline containing 0.1% Tween-20 (TBS-T), and incubated with primary antibodies, made up in TBS-T (0.1% Tween 20) and 5% Western Blotting-Reagent, at 4°C overnight. The following primary antibodies and dilutions were used: anti-AIF (1:1000, #ab32516, Abcam), anti-NDUFA9 (1:1000, #459100, Invitrogen), anti-NDUFB8 (1:1000, #459210, Invitrogen), anti-Complex II 70 kDa Fp Subunit (1:1000, #459200, Invitrogen), anti-UQCRC1 (1:1000, #459140, Invitrogen), anti-Complex IV (1:1000, #459110, Invitrogen), anti-ATP synthase subunit β (1:1000, #21351, Invitrogen) and, as loading control: anti-β-actin (1:2000, #A2228, Sigma Aldrich) or anti-calnexin (1:4000, #208880, Merck Milipore). Quantification of chemiluminescent signals was performed with the ImageJ (Fiji)-software package (Schneider et al., 2012 (link)).
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10

Western Blot Analysis of NMD Pathway Proteins

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Proteins were electrophoresed in 6–14% polyacrylamide, transferred to a nitrocellulose (Bio-Rad) or polyvinylidene difluoride (Millipore) membrane and probed as described5 (link) using the following antibodies (see Supplementary Table 6): anti-p-UPF1 S1116 (1:1,000), anti-UPF1 (1:2,000), anti-FMRP (1:2,000), anti-SMG7 (1:2,000), anti-eIF4A3 (1:1,000), anti-PABPC1 (1:2,000), anti-β-actin (1:5,000), anti-CBP80 (1:2,000), anti-eIF4E (1:2,00), anti-SMG5 (1:2,000), anti-SMG6 (1:1,000), anti-UPF2 (1:2,000), anti-UPF3X/UPF3B (1:2,000), anti-SMG1 (1:2,000), anti-mTOR (1:2,000), anti-HERC2 (1:2,000), anti-GADD45B (1:2,000), anti-ATF3 (1:2,000), anti-ARHGEF18/p114RhoGEF (1:2,000), anti-GAPDH (1:5,000), anti-OCT4 (1:2,000), anti-SOX2 (1:2,000), anti-β3-tubulin/TUJ1 (1:2,000), anti-MAP2 (1:2,000), anti-BRN2/POU3F2 (1:2,000), anti-FOXG1 (1:2,000), anti-doublecortin/DCX (1:2,000), anti-synapsin1/SYN1 (1:2,000), anti-calnexin (1:5,000), anti-MS2CP (1:2,000), anti-GFP (1:500), anti-HA HRP (1:1,000) or anti-FLAG HRP (1:1,000; Sigma–Aldrich). Western blots were quantitated using Image Studio Lite Version 4.0 (LI-COR Biosciences). Dilution standards assured that quantitations were in the linear range of analysis.
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