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56 protocols using vegfa

1

Western Blot Analysis of Glioblastoma Cell Lines

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Post-transfection, U87 or U251 cells were lysed with buffer containing RIPA for 30 min on ice and then centrifuged at 12,000 g/min for 20 min at 4°C. Cell lysates were assessed for total protein concentration using the BCA protein assay kit. Subsequently, 20 μg protein samples were separated on 10% SDS-PAGE using the Bio-Rad Bis-Tris Gel System (Bio-Rad, CA, USA) and transferred to polyvinylidene fluoride membranes (Millipore, Danvers, MA, USA). Membranes were blocked with 5% non-fat milk for 60 min at room temperature. The primary antibodies used were VEGFA (1:500, Proteintech, USA), VEGF2 (1:500, Proteintech, USA), Akt (1:5000, Proteintech, USA), mTOR(1:5000, Proteintech, USA), and β-actin (1:5000, Proteintech, USA); the corresponding secondary antibodies were anti-mouse and anti-rabbit (Proteintech, USA). Primary antibodies against VEGFA were purchased from Bioss Co., Ltd. (Beijing, China), and primary antibodies against VEGFA, Akt, mTOR, and β-actin were purchased from Proteintech, USA. Finally, proteins were detected by enhanced chemiluminescence (ECL).
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2

Protein Expression Analysis in Cell Metabolism

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Total proteins were extracted by RIPA buffer supplemented with PMSF (Solarbio, Beijing, China) and quantified by a BCA kit. Then, the proteins were separated in SDS-PAGE gels and transferred into PVDF membranes (Millipore, Massachusetts, USA). Membranes were blocked with TBST with 5% skim milk powder and incubated overnight at 4 °C with primary antibodies against YAP1 (1:1000), P-YAP1 (1:1000), VEGFA (1:1000), Hexokinase II (HK2; 1:5000), LDHA (1:2000), HIF1A (1:1000), GAPDH (1:5000), Tublin (1:1000), and β-actin (1:1000) (Proteintech, Wuhan, China). The next day, blots were washed with PBS and then secondary antibodies were incubated with the membrane at room temperature for 1 h. The membrane was visualized using a chemiluminescence kit (Absin, Shanghai, China) and quantified by densitometry analysis using ImageJ software. GAPDH and tubulin were used as loading controls.
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3

Western Blot Analysis of Cell Signaling Proteins

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Tissue or cell protein samples were extracted, quantified and diluted with 5× loading buffer to the same concentrations, denatured at 95°C, then separated by electrophoresis on 10% or 12% sodium dodecyl sulphate (SDS) polyacrylamide gels. The proteins were transferred to Hybond membrane (Amersham, Munich, Germany); the membranes were blocked with 5% skimmed milk at room temperature for 1‐2 hours, then incubated with primary antibodies against cyclin D1, CDK1, CDK2, CDK4, Bcl‐xl, VEGFA, and p16 antibodies (1:1000; Proteintech, Proteintech Group, USA) overnight at 4°C. The membranes were washed three times with Tris‐buffered saline (TBST), incubated with the corresponding secondary antibodies (1:5000) for 2 hours and washed three times with TBST, and the protein bands were visualized using enhanced chemiluminescence reagent (Santa Cruz Biotechnology, Santa Cruz, CA, USA).
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4

DEHP and Doxorubicin Signaling Pathway Analysis

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DEHP (Sigma-Aldrich, 36735, Saint Louis, MO, USA) was reconstituted in DMSO (Sigma-Aldrich, Saint Louis, MO, USA). Doxorubicin (Dox) (Sigma-Aldrich, D1515, Saint Louis, MO, USA) was dissolved in DMSO (Sigma-Aldrich, Saint Louis, MO, USA). Primary antibodies for proteins: Endoglin/CD105 (71 kDa, Proteintech, 10862-1-AP, Rosemont, IL, USA), MAPK (ERK1/2) (44 kDa, Cell Signaling, 137F5, Danvers, MA, USA), phospho-MAPK (ERK1/2) (Thr202/Tyr204) (44 kDa, Cell Signaling, 9101 s, Danvers, MA, USA), p38 (38 kDa, Proteintech, 14064-1-AP, Rosemont, IL, USA), phospho-p38 (Tyr182) (38 kDa, Santa Cruz, SC-166182, Santa Cruz, CA, USA), GAPDH (35.5 kDa, EMD Millipore, MAB374, Burlington, MA, USA), Smad2/3 (52, 60 kDa, Cell Signaling, 8685, Danvers, MA, USA), phospho-Smad2 (Ser465/467)/Smad3 (Ser423/425) (52, 60 kDa, Cell Signaling, 8828, Danvers, MA, USA), β actin (43 kDa, Santa Cruz, SC-47778, Santa Cruz, CA, USA), and VEGFA (43 kDa, Proteintech, 66828-1-IG, Rosemont, IL, USA). Secondary antibodies: Goat anti-rabbit IgG (Alexa Fluor 594, Invitrogen, A11012, Waltham, MA, USA) was used as the secondary antibody.
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5

Protein Quantification by Western Blot

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Total cell lysates were separated by SDS‐PAGE (sodium dodecyl sulphate polyacrylamide gel electrophoresis) and blotted on polyvinylidene difluoride membranes (Millipore). Then, the membranes were blocked with 5% milk (170‐6404, Bio‐Rad Laboratories, Inc) and incubated with specific antibodies to Klf3 (Invitrogen Antibodies, PA5‐18030, 1:1000), JunB (Cell Signaling Technology, 3753, 1:1000), VEGFA (Proteintech, 19003‐1‐AP, 1:1000) and α‐Tublin (Proteintech, 11224‐1‐AP, 1:2000). Blots were visualized using SuperSignal West Pico PLUS Chemiluminescent Substrate (SD251210, Thermo Fisher Scientific, Inc).
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6

XLLXF Modulates Protein Expression in MDA-MB-231 Cells

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After the MDA-MB-231 cells were treated with XLLXF (50, 100, and 200 µg/mL) for 24 and 48 h, total cell protein lysates were extracted using RIPA lysis buffer that contained protease and phosphatase inhibitor cocktails. Protein lysates (20 µg), which were determined by BCA analysis (Beyotime, China), were loaded onto 10% SDS-PAGE gels. The protein bands were transferred onto NC membranes and blocked with 5% non-fat milk for 1 h at room temperature. The NC membranes with proteins were incubated with diluted primary antibodies at 4 °C overnight. The primary antibodies used in the analyses were as follows: VEGFA (1:1,000, Proteintech), MMP2 (1:1000, Proteintech), MMP9 (1:1000, Cell Signaling Technology), Vimentin (1:1000, Proteintech), VE-cadherin (1:1,000, Cell Signaling Technology), TIMP-1 (1:1000, Proteintech), TIMP-3 (1:1,000, Proteintech), and Twist1 (1:1000, Proteintech). The membranes were incubated with relative sources of secondary antibodies (1:5000) at room temperature for 1 h. Specific protein bands were recognized with Immobilon Western Chemiluminescent HRP Substrate (Millipore, MA, USA). Image J software was used for image analysis.
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7

Immunohistochemical Analysis of Tissue Samples

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The tissues were fixed in a 4% paraformaldehyde solution and embedded in paraffin. The tissue sections were dewaxed in xylene,
hydrated in graded alcohol solution, and heated (100 °C) in citric acid solution (pH 6.0) for antigen repair. For single
immunostaining, the endogenous peroxidase in the tissue was blocked using endogenous peroxidase blocking solution,
and 5% BSA was used to block the tissue’s nonspecific proteins. The sections were incubated overnight at 4 °C
with the indicated antibodies, followed by incubation with the corresponding horseradish peroxidase-coupled secondary
antibodies (#PV9001, Beyotime). Finally, 3,3′-diaminobenzidine (#PV6000D, Beyotime) was used to detect these labeled
antibodies and the nuclei were stained using hematoxylin. The primary antibodies were as follows: SHMT2
(1:100, #33443, Cell Signaling Technolog), HIF1α (1:100, #36169, Cell Signaling Technology), VEGFA (1:100, #19003, Proteintech),
KI67 (1:50, #5032, PTM Bio, Hangzhou, China), and CD31 (1:50, #ab28364, Abcam, Cambridge, MA, USA).
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8

Angiogenesis and Immune Cell Analysis

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Rabbit anti-human MPP6, VEGFA and VEGFR2 polyclonal antibodies were provided from Proteintech (Wuhan, China), and anti-CD34 monoclonal antibody, anti-CD3+/CD4+/CD8+ T-cell monoclonal antibodies, secondary antibodies, and SP kits were purchased from Fuzhou Maishin Biotechnology (Fuzhou, China). These tissues were routinely dewaxed, hydrated, subjected to antigen repair with citrate buffer solution, and then assessed. All operating procedures strictly adhered to kit instructions. The MPP6, VEGFA and VEGFR2 primary antibody dilation ratio was 1:200, and anti-CD34 monoclonal antibody and anti-CD3+/CD4+/CD8+ T-cell monoclonal antibodies were ready-to-use antibodies. According to the positive signal, staining intensity was classified by unstained as negative, light yellow as (+), yellowish-brown as (++) and brown as (+++). Samples with MPP6 staining intensities of (+) and (+++) were chosen for VEGFA, VEGFR2 and CD34 staining to observe angiogenesis and CD3+/CD4+/CD8+ T-cell staining to evaluate immune cell distribution.
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9

Temozolomide Mechanism in Glioblastoma

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Temozolomide (TMZ) was purchased from Aladdin Reagent Company (http://www.aladdin-e.com). Other reagents were purchased from Beyotime Institute of Biotechnology. Primary antibodies: EGFR, cat no. 18986-1-AP, 1:1,000, Proteintech Group, Inc., Chicago, IL, USA; STAT3, cat no. 9139S, 1:1,000, Cell Signaling Technology, Inc., Danvers, MA, USA; p-STAT3, cat no. 9145S, 1:1,000, Cell Signaling Technology, Inc.; HIF-1A, cat no. 14179S, 1:1,000, Cell Signaling Technology, Inc.; VEGF-A, cat no. 19003-1-AP, 1:1,000, Proteintech Group, Inc.; Bax, cat no. 50599-2-Ig, 1:1,000, Proteintech Group, Inc.; Bcl-2, cat no. 12789-1-AP, 1:1,000, Proteintech Group, Inc.; MGMT, cat no. A-1010-050, 1:1,000, Epigentek, Farmingdale, NY, USA; β-actin, cat no. TA-09, 1:1,000, OriGene Technologies, Inc., Rockville, MD, USA). HRP-conjugated secondary antibodies: HRP-conjugated Affinipure Goat anti-mouse IgG, cat no. SA00001-1, 1:2,000, Proteintech Group, Inc.; HRP-conjugated Affinipure goat anti-rabbit IgG, cat no. SA00001-2, 1:2,000, Proteintech Group, Inc.
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10

Western Blot Analysis of Angiogenic Markers

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Proteins from cells were extracted with RIPA lysis buffer (Beyotime, China) supplemented with protease inhibitors (Beyotime, China). Proteins were separated through sodium dodecyl sulfate‒polyacrylamide gel electrophoresis (SDS‒PAGE) and then bolted on polyvinylidene difluoride (PVDF) membranes (Millipore, USA). After blocking nonspecific sites with 5% milk (Beyotime, China) for 1 hour, the PVDF membranes were incubated with primary antibodies against CD31, VEGFA, N-cadherin and vimentin (Proteintech, China) at 4 °C overnight. The membranes were then incubated with secondary antibodies (Bioss, China) at room temperature for 1 hour. The protein bands were visualized using a Fusion FX System (Vilber, Germany).
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