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4 protocols using app clone 22c11

1

Plasmid Handling and Antibody Validation

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Human V5-tagged VPS35 plasmids were obtained from Addgene (no. 21691; ref. 58 (link)) and previously described (18 (link)). Mouse VPS35 cDNA was obtained from Dharmacon. Primary antibodies used were VPS35 (ab57632 or ab154647; Abcam), VPS26 (ab23892; Abcam), VPS29 (ab10160; Abcam), WASH1 (Sigma), Fam21A-D (S-13; Santa Cruz), V5 and V5-HRP (Life Technologies), TH (NB300-109; Novus Biologicals or clone TH-2; Sigma), α-synuclein (clone 42; BD Biosciences), pSer129-α-synuclein (clone EP1536Y; Abcam), APP (clone 22C11; Millipore), tau (clone Tau5; Millipore), phospho-tau (clones AT8, PHF1, CP13, and MC1, provided by Peter Davies, Feinstein Institute for Medical Research, New York), NeuN (ABN78; Millipore), Iba1 (Wako), GFAP (DAKO), and β-tubulin (clone TUB 2.1; Sigma). Secondary HRP-conjugated IgG, light chain-specific (Jackson Immunoresearch), biotinylated IgG (Vector Labs), and AlexaFluor-488 or -594 IgG (Thermo Fisher) were used.
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2

Histological Analysis of Neurological Tissues

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Mice were transcardially perfused with PBS containing 5 IU/ml heparin (De Pannemaeker, Ghent, Belgium), followed by perfusion with 4% paraformaldehyde. Brain and spinal cord tissue were dissected, dehydrated, and embedded in paraffin blocks. Alternatively, for vibratome sections brains were stored in low-melting agarose until further processing. Sections of 5 µm were stained with Luxol fast blue (Solvent Blue 38, practical grade; Sigma Genosys) for assessment of demyelination, or incubated with antibodies against CD3 (clone CD3–12; Serotex), Mac-3 (clone CD107b, M3/84; Becton Dickinson Biosciences), B220 (clone RA3-6B2; Becton Dickinson Biosciences), amyloid precursor protein (APP; clone 22C11; Millipore), Iba-1 (Wako Chemicals), or Ki67 (clone D3B5; Cell Signaling). Sections were rehydrated and incubated in antigen retrieval buffer (Dakopatts). Endogenous peroxidase activity was blocked by immersing slides in 3% H2O2. Nonspecific binding was blocked by incubating sections in 5% NGS and 0.1% Triton X-100. Primary antibodies were incubated overnight at 4 °C.
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3

Protein Markers for Neurodegenerative Disorders

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Primary antibodies used: tau (K9J8; Dako, Burlington, ON, Canada; cat. no. A002401-2, 1:1000), phospho-tau (AT8; Thermo Fisher Scientific, Cleveland, OH, USA; cat no. MN1020, 1:1000), APP (clone 22C11; Millipore, Burlington, MA, USA; cat. no. MAB348, 1:1000), vGlut1 (Synaptic Systems, Göttingen, Germany; cat. no. 135 303), β-III-tubulin (BioLegend, San Diego, CA, USA; cat. no. 801202, 1:5000) and Glyceraldehyde 3-phosphate dehydrogenase (Millipore, Burlington, MA, USA; cat. no. MAB374, 1:5000).
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4

Comprehensive Immunostaining Protocol

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Primary antibodies: HT7 (mouse, Thermo Scientific, 1:1,000), AT8 (mouse, Thermo Scientific, 1:1,000), NF200 (rabbit, Sigma–Aldrich, 1:1,000), APP (clone 22C11, mouse, Millipore, 1:1,000), Iba1 (rabbit, Wako, 1:5,000), CD11b (rat, Serotec, 1:1,000), Olig2 (rabbit, Millipore, 1:1,000), NG2 (rabbit, Millipore, 1:1,000) APC (mouse, clone CC1, Chalbiochem, 1:200), SOX2 (goat, Santa Cruz, 1:300), MBP (rat, Serotec, 1:300 in IHC, 1:500 for ICC, and 1:2,000 for WB), βIII‐tubulin (Rabbit, AbCam, 1:500), β‐actin (mouse, Sigma–Aldrich, 1:10,000). Biotin‐conjugated secondary antibodies (Vector, 1:1,000), Alexa‐conjugated secondary antibodies (Molecular Probes, 1:1000), HRP‐conjugated secondary antibodies (1:5000): anti‐mouse and anti‐rabbit (GE), anti‐rat (Vector).
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