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10 protocols using kindlin 2

1

FHL1 Phosphorylation Signaling Pathways

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FHL1 (rabbit) antibody was purchased from ProteinTech. BCLAF1 (rabbit) and kindlin-2 (mouse) antibodies were from EMD Millipore. kindlin-2 (rabbit), Flag (mouse), GFP (mouse), and HA (mouse) antibodies as well as anti-flag M2 beads were purchased from Sigma-Aldrich. Src (mouse), β-actin (mouse), YY1 (mouse), and β-tubulin (mouse) were obtained from Santa Cruz Biotechnology, Inc. Anti–p-Src Y416 and –p-Tyr–100 specifically recognizing phosphorylated tyrosine were purchased from Cell Signaling Technology. Antibodies specifically recognizing Y149- and Y272-phosphorylated FHL1 were produced by immunizing rabbits with phosphorylated peptides FFPKGEDFYPCVTC and CHQEQVYPCPDCAKK, respectively (Kang Wei Shi Ji). Secondary antibodies conjugated with Alexa Fluor 488, 568, or 633 for immunofluorescence were purchased from Invitrogen. Src family kinase inhibitor PP2 was purchased from Sigma-Aldrich. λ-Phosphatase (P0753S) was obtained from New England Biolabs, Inc.
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2

Immunofluorescence Analysis of Cardiomyocytes

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Isolated CMs were fixed in acetone at −20°C for 5 minutes. After permeabilization with wash buffer (PBS with 0.2% TX-100), CMs were blocked in blocking solution (PBS with 5% normal donkey serum, 1% BSA, 0.2% TX-100) for 1 hour at room temperature, then incubated overnight with the indicated primary antibody in blocking buffer in a humidified chamber at 4°C. Cells were rinsed in wash buffer and incubated at room temperature with fluorescently-conjugated secondary antibodies and DAPI, diluted in blocking buffer for 1 hour. Cells were rinsed again in wash buffer and mounted in mounting buffer (Dako). Confocal microscopy was performed using an Olympus FluoView™ FV1000 confocal microscope. Primary antibodies: Kindlin-2 (1:150, Sigma), α-Actinin (1:200, Sigma), Vinculin (1:200, Sigma).
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3

Probes for Kindlin-1 and Kindlin-2 Analysis

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All sense and antisense probes except for kindlin-1 and kindlin-2 were obtained from Sigma (St. Louis, MO, USA) and are depicted in Table 1. The probes for kindlin-1 and kindlin-2 were a kind gift of Reinhard Faessler, Max Planck Institute of Biochemistry, Munich, Germany. The efficiency of siRNA knockdown was confirmed by Western blotting. Transport characteristics included dependency on time, concentration, temperature and pH and was evaluated as described [1 (link)].
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4

Analysis of Colonic Cancer Proteins

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Surgically removed colonic cancer tissues and adjacent normal tissues were collected from three patients at Peking University Third Hospital (Beijing, China) and used for Western blot analysis. The experiments were approved by the Ethics Committee of Peking University Third Hospital.
Immunohistochemical staining for specific protein expression was performed on mouse tissue sections. In brief, sections (4 mm thick) were deparaffinized with xylene, followed by rehydration in ethanol. Hydrogen peroxide (3%) was used to eliminate endogenous peroxidase. Sections were incubated overnight at 4°C with primary antibodies against Kindlin-2 (Sigma-Aldrich), 1:200; Smurf1 (Abcam), 1:100; and Smad1 (Bioss), 1:100. After extensive washing in PBS buffer, sections were incubated for 30 min with secondary antibodies (Dako). Immunostaining was examined with a BX51 microscope (Olympus), and images were photographed with a 40× objective.
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5

Integrin β3 Signaling Pathway

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Antibodies used were directed against β-actin (clone C4; Chemicon), integrin β3 (clone C-17 from Dr. E. van der Schoot, Sanquin Research, Amsterdam, The Netherlands; integrin β1 (clone TS2/16, Developmental Studies Hybridoma Bank), kindlin-2 (from Dr. R. Faessler, Max Planck Institute of Biochemistry, Martinsried, Germany), P(Y) (clone 4G10 from Sigma-Aldrich), Rac (Transduction laboratories), RhoA (Cell Signaling), VE-Cadherin (clone 55-7H1, BD biosciences) and VEGFR2 (R&D Systems). The β3 deletion mutants were obtained from Dr. J. Ylanne (University of Jyvaskyla, Finland) and recloned into LZRS-IRES-zeo as described previously [92] , while Rac and RhoA mutants fused to mCherry or GFP were from Dr. J. Collard (Netherlands Cancer Institute, Amsterdam, The Netherlands). GFP-tensin-1 was from Dr. K. Yamada (National Institute of Health, Bethesda, MD), Rhotekin-RBD and PAK-CRIB peptides were home-made, human fibrinogen was from CSL Behring, collagen-coated Cytodex beads, puromycin, zeocin, human thrombin, and human FN were from Sigma-Aldrich. TRITC-, FITC-, and Cy5-conjugated secondary antibodies, phalloidins, and DAPI were from Molecular Probes, Fugene was from Promega, and HRPconjugated secondary antibodies were from Amersham.
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6

Western Blot Analysis of Kindlin-2 in Mouse Wound Tissue

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The mouse wound tissues were weighed and lysed in RIPA buffer with inhibitors and quantified by BAC as previously described [20 (link)]. Then, the lysates were subjected to SDS-PAGE followed by transfer onto a PVDF membrane. The antibodies used were rabbit monoclonal antibodies against Kindlin-2 (Sigma-Aldrich) and GAPDH (Cell Signaling Technology). The blots were visualized using enhanced chemiluminescence (ECL) reagent. ImageJ software (National Institutes of Health, Bethesda, MD, USA) was used to analyze blot density.
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7

Immunohistochemical Analysis of Kindlin Proteins in Osteosarcoma

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Immunohistochemistry was performed to examine subcellular localizations and expression patterns of Kindlin proteins in osteosarcoma and noncancerous bone tissues. All fresh, resected tissue samples were fixed in 10% formalin, embedded in paraffin and cut into 4 μm-thick sections, which were subsequently dewaxed in xylene and rehydrated with graded alcohol. Following rinsing with distilled water, the antigen was incubated in ethylenediaminetetraacetic acid buffer at 100°C for 20 min and then cooled to room temperature. The slides were then incubated at 4°C overnight with the primary antibodies: Kindlin-1 (rabbit polyclonal antibody, Millipore; 1:100 dilution), Kindlin-2 (rabbit polyclonal antibody, Millipore; 1:150 dilution) and Kindlin-3 (rabbit polyclonal antibody, Abcam; 1:100 dilution). After washing with phosphate-buffered solution (PBS) three times, the biotin-labeled secondary antibody was added and the sections were incubated at room temperature for 10 min. After washing with PBS three times, 3,3′-diaminobenzidine chromogenic reagents were added. Then, sections were counterstained with hematoxylin, dehydrated and mounted. The negative controls were processed in a similar manner with PBS instead of the primary antibodies.
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8

Kindlin Protein Expression in Osteosarcoma

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Total proteins of osteosarcoma and adjacent noncancerous tissues were extracted using radioimmunoprecipitation assay buffer containing phenylmethanesulfonyl fluoride and were quantified by a BCA kit (Thermo, Waltham, MA, USA). Proteins were separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes. Then, the membranes were blocked with 5% nonfat milk (Bio-Rad) in Tris-buffered saline containing Tween 20 (TBST) solution, overnight at 4°C. After that, the following primary antibodies were used: Kindlin-1 (rabbit polyclonal antibody; Millipore, Billerica, CA, USA; 1:100 dilution), Kindlin-2 (rabbit polyclonal antibody, Millipore; 1:150 dilution), Kindlin-3 (rabbit polyclonal antibody; Abcam, MA, USA; 1:100 dilution) and GAPDH (rabbit polyclonal antibody, Abcam; 1:150 dilution). Secondary antibodies were incubated after washing with TBST at room temperature for 1 h (horse radish peroxidase labeled goat anti-mouse IgG, 1:1000; Sangon Biotech, Shanghai, China). The membranes were detected by ECL system (Pierce, Rockford, IL, USA), and gray assay was performed by ImageQuant 5.2 software. GAPDH protein levels were used as a control to verify equal protein loading.
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9

SDS-PAGE Protein Separation and Western Blot

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Proteins were separated on SDS-PAGE and transferred to PVDF membrane (Millipore, Bedford, MA). The membranes were blocked with 5% non-fat milk and incubated with antibodies against E-cadherin (1:400, Santa Cruz Biotechnology, Santa Cruz, CA), vimentin (1:500, Dako, Carpinteria, CA), Kindlin-2 (1:2000, Millipore), phospho-AKTS473 (1:1000, Cell Signaling), AKT (1:1000, Cell Signaling), and β-actin (1:10000, Sigma, St. Louis, MO, USA). The proteins were detected with Western Blot Luminol Reagent (Santa Cruz Biotechnology).
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10

Western Blot Analysis of ESCC Cells

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Total lysates were obtained from harvested ESCC cells with the 1 × RIPA buffer (Cell Signaling Technology, Danvers, MA, USA) supplemented with protease inhibitors. The concentration was determined by the BCA Protein Assay kit (Pierce, Rockford, IL, USA) and identical quantities of proteins (20–30 μg) were separated by SDS-polyacrylamide gel electrophoresis. The proteins were then transferred to PVDF membranes. After blocking with 5% non-fat milk in TBST, the membranes were probed with the indicated primary antibodies at 4 °C overnight with gentle shaking. The membranes were then exposed to the corresponding secondary antibody and the SupreSignal ECL Kit (Pierce) was used to detect bands, with GAPDH as the internal control. The primary antibodies used in our study include E-cadherin (1:500), Vimentin (1:500), β-catenin (1:500, Cell Signaling Technology), Kindlin-2 (1:2000, Millipore, Bedford, MA, USA) p-FAK(Tyr397) (1:1000, Cell Signaling Technology), FAK (1:500, Cell Signaling Technology), active RhoA (1:500, Cell Signaling Technology), total RhoA (1:500, Cell Signaling Technology) and GAPDH (1:5000, Sigma, Sigma-Aldrich, St. Louis, MO, USA). HRP-conjugated goat anti-rabbit or anti-mouse IgG antibody (Abcam, Cambridge, MA, USA) was used as the secondary antibody.
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