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7 protocols using anti ly6g pe cy7

1

Multiparameter Flow Cytometry of BALF

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BALF was collected from control and IAV infected WT and IFNγR-/- mice. Lungs were flushed multiple times with 1 ml ice-cold sterile HBSS with 3 mM EDTA, pH 7.2. BALF was pooled and maintained on ice until centrifugation at 350×g for 10 min, 4 °C, and treated with red blood cell lysis buffer prior to further analysis. Cells were resuspended in FACS buffer (PBS/FCS) with Fc block (CD16/32, 0.5 mg/ml; BD Biosciences, UK) and stained for 1 h at 4 °C using the following antibodies: anti-CD11b-APC (M1/70.11.5; Miltenyi Biotec Ltd., UK), anti-Ly6G-PE/Cy7 (BD Biosciences), anti-CD4-PE (RM4–5; BD Biosciences), anti-CD8-FITC (53–6.7; BD Biosciences), anti-CD11c-PE/Cy7 (N418; BioLegend, UK), anti-Siglec-F BV421 (E50–2440; BD Biosciences), and appropriate isotype/FMO controls. Cell viability was determined using Zombie fixable dyes during staining to exclude dead cells (Zombie Aqua or Violet; BioLegend). Cells were fixed with BD Cytofix (BD Biosciences) and analysed using the BD LSR Fortessa and FlowJo V10 software (FlowJo LLC, USA) using a gating strategy adapted from Misharin et al. (2013) (link) (Supplementary Fig. S4).
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2

Bone Marrow Macrophage Differentiation

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Freshly isolated mouse bone marrow cells were cultured in the presence of M-CSF (20 ng/ml) or L929 cell CM for 7 days. Adherent cells were released with trypsin and stained with anti-F4/80-PE (BioLegend, San Diego, CA), anti-CD11b-FITC, anti-CD11c-APC and anti-Ly-6G-PE/Cy7 (BD Biosciences, San Jose, CA). Flow cytometry was performed on a BD LSRII at the UNMC Flow Cytometry Research Facility. Data were analyzed using FlowJo software (FlowJo, Ashland, OR).
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3

Tumor Dissociation and Flow Cytometry Analysis

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Weighed tumors were minced and allowed to digest in a 2 ml mixture of collagenase (400 U type II collagenase, Worthington) and 0.2 mg/ml DNase I in RPMI media at 37°C for 1 hr. The mixture was gently vortexed every 10-20 minutes. The tissue lysate was filtered through a 40 μm mesh prior to immunostaining. The resulting single cell suspension was stained with fixable viability dye eFluor 780, anti-CD45.2 Pacific Blue, anti-CD3 PE-Cy7, anti-CD3 Alexa Fluor 700, anti-Foxp3 Alexa Fluor 700, anti-CD11c eFluor 615, anti-NK1.1 PE (all from eBioscience), anti-Granzyme B APC and anti-CD4 Qdot 605 (from Life Technologies), anti-CD8 Brilliant Violet 650, anti-CD11b Brilliant Violet 570, anti-CD19 Brilliant Violet 650, anti-F4/80 FITC (all from BioLegend), anti-Ly6C APC, anti-Ly6G PE-Cy7, and anti-Ki67 PE (BD Biosciences). The percent positive cells were analyzed by FlowJo and gated on CD45 positivity. To analyze the number of CD133+CD44+ cells, the single cell suspension was incubated in the dark, on ice with Aqua LIVE/DEAD Fixable Dead Cell Stain (Molecular Probes) 1:1000 for 30 min, followed by staining with anti-CD44 APC (eBioscience, 1: 400) and anti-CD133 PE (eBioscience, 1: 200). Unstained, LIVE/DEAD only, and single stain served as control. Doublets were gated out using forward scatter width/height and sideward scatter width/height event characteristics.
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4

Neutrophil Depletion in Murine CVB3 Model

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To deplete neutrophils in mice, 250 μg (12.5 mg/Kg) of anti-Ly-6G (clone 1A8, Biolegend) and isotype control (rat IgG2a, Biolegend) Abs, or 200 μg (10 mg/Kg) of Anti-Gr-1 (clone RB6-8C5, Biolegend) in 100 μl PBS were injected i.p. into mice 24 h prior to and 3 days after inoculation with CVB3 (Day 0). To evaluate influence of neutrophils on the development of cardiac fibrosis, mice received Abs injection on days −1, 3, 6, 9, 12, 15, and 18. Blood was collected by saphenous venous puncture. Total white blood cell counts (WBC) were determined by visual enumeration after trypan blue exclusion. The percentage of neutrophils was determined by flow cytometry using antibody cocktails (anti-CD45-APC/Cy7, anti-CD11b-FITC, anti-Gr-1-PercP/Cy5.5, and anti-Ly6G-PE/Cy7, BD PharMingen). Fluorescent intensity was determined using a FACS CantoII flow cytometer (BD Bioscience) and the data were analyzed using FlowJo v10.0 software (Tree Star).
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5

Immunophenotyping of Lung Immune Cells

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1 × 106 cell suspension from lung digests and BAL were incubated with antibody cocktail containing APC-anti-CD206 (BioLegend. San Diego, CA), PerC-Cy5-anti-F4/80, PE-Cy7-anti-Ly6G, PE-Cy3-anti-p-STAT6, APC-Cy7-anti-CD11b, BV421-anti-Siglec-F (BD Biosciences, Franklin Lakes, NJ and eBioscience, San Diego, CA). After incubation at dark for 40 min, the stained cells were washed for 2 times and analyzed on FACScan cytometer and Flow Jo software, version 8.8.4 (Becton, Dickinson and Company, Franklin Lakes, NJ).
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6

Immune Cell Profiling by Flow Cytometry

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The 0.3 × 106 cell suspensions of lung digests or BAL were incubated with an antibody cocktail containing PE-anti-CD45, PerC-Cy5-anti-F4/80, PE-Cy7-anti-Ly6G, APC-Cy7-anti-CD11b, and BV421-anti-Siglec-F (BD Biosciences, Franklin Lakes, NJ, USA; eBiosciences, San Diego, CA, USA). After incubation with the antibody cocktail for 40 min at room temperature, the cells were washed twice with PBS. The stained cells were analyzed by a BD FACSAria™ III instrument and BD FACSDiva™ software (BD Biosciences, San Jose, CA, USA). All data were analyzed using FlowJo software, version 8.8.4 (Tree Star Inc., Ashland, OR, USA).
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7

Inflammatory Cytokine and Cell Profile

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The concentration of TNF-α, IL-6, IL-1β and Calreticulin in BAL or cell supernatants were measured by ELISA assay according to industrial instructions (R&D systems, Minneapolis, MN).
Flow Cytometry analysis 1 × 10 6 cell suspension from lung digests and BAL were incubated with antibody cocktail containing APCanti-CD206 (BioLegend. San Diego, CA), PerC-Cy5-anti-F4/80, PE-Cy7-anti-Ly6G, PE-Cy3-anti-p-STAT6, APC-Cy7-anti-CD11b, BV421-anti-Siglec F (BD Biosciences, Franklin Lakes, NJ and eBioscience, San Diego, CA). The cells stained with uorescence-minus-one (FMO) antibody cocktail were unstained controls. The cells were incubated with antibod cocktail in PBS supplied with 3% FBS for 40 min and washed with PBS for 2 times at room temperature. Analysis was performed on FACScan cytometer and all data were analyzed using FlowJo software, version 8.8.4 (Becton, Dickinson and Company, Franklin Lakes, NJ).
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