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8 protocols using plenti cmv mcs gfp sv puro

1

Lentiviral Engineering of MPI-2 Cell Line

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MPI-2-eGFP were generated by lentiviral engineering of MPI-2 cell line to stably express eGFP. Lentiviral vectors were produced following a standard procedure based on calcium phosphate cotransfection with a third-generation helper (pMD2.g/VSV.G (Addegene #12259), pRSV-Rev (Addgene #12253), and pMDLg/pRRE (Addegene #12251) and transfer plasmids. The transfer vector pLenti-CMV-MCS-GFP_SV-puro (Addgene #73582) was a kind gift from Raffaele De Francesco (National Institute of Molecular Genetics, Milan, Italy). The expression of eGFP in transduced cells was confirmed by flow cytometry. The expression of eGFP was observed in more than 80% of the cells and found to be stable through cell passages.
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2

Generating eGFP Viral Pseudoparticles

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To generate eGFP viral pseudoparticles, 5 × 106 HEK-293T cells were plated in 15-cm dishes with a complete DMEM medium. The next day, 32 μg of pLenti-CMV-MCS-GFP_SV-puro (Addgene #73582, Teddington, UK), 12.5 μg of pMDLg/pRRE (Addgene #12251, Teddington, UK), 6.25 μg of pRSV-Rev (Addgene #12253, Teddington, UK), and 9 μg of VSV-G (Addegene #12259, Teddington, UK) were co-transfected following a standard procedure based on calcium phosphate transfection. After 12 h from transfection, the medium was changed with 16 mL of complete ISCOVE for each dish. Thirty hours after transfection, the supernatant was collected, clarified by filtration with a 45 μm pore-size filter, and concentrated 400× by centrifugation (2 h at 20,000 rpm) using SW32Ti. Viral pseudoparticles were aliquoted and stored at −80 °C.
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3

Cloning of Human ACE2 Protein

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The mature polypeptide of human ACE2 (GenBank NM_021804.3) was cloned in to the XbaI-BamHI site of pLenti-CMV-MCS-GFP-SV-puro (Addgene #73582). IRES linker was previously inserted into pcDNA3-sACE2v4-sfGFP via BamHI restriction enzyme site. The pcDNA3-sACE2v4-IRES-sfGFP insert was removed by restriction enzymes using NheI- XhoI. Next, the NheI-XhoI sites were converted into XbaI-BamHI by PCR (Primers: Forward-TAGCCTAGAGCCACCATGTCAAGCT, Reverse-CACCTGATCCCATTTGTAG AGCTCATCCATGCCATG) to be compatible with pLenti-CMV-MCS-SV40-PURO vector. Amplicon size was evaluated through gel electrophoresis in agarose 1.2%. DNA band was excised from the gel and purified using gel clean up reaction (Macherey Nagel). DNA insert and linear destination vector were mixed at a 1:1 ratio respectively. T4 was used for the ligase reaction and incubated overnight at 16 °C. Successful ligation of the inserted vector was verified through gel electrophoresis in agarose 2%. The DNA band was excised from the gel and purified using gel clean up reaction (Macherey Nagel).
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4

Generating EGFP-MCOLN1 Lentiviral Construct

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To obtain EGFP-MCOLN1 construct for lentiviral transduction, human MCOLN1 was amplified by PCR using the following oligonucleotides with overhangs (underlined): 5′-GACACCGACTCTAGAATGGTGAGCAAGGGCGAGGAGC-3′ (forward) and 5′-AACTAGTCCGGATCCTCAATTCACCAGCAGCGAATGC-3′ (reverse) from the mucolipin1-pEGFP C3 (plasmid #62960; Addgene) construct and subcloned into XbaI and BamHI restriction sites of the pLenti-CMV-MCS-GFP-SV-puro (plasmid #73582; Addgene) vector using the sequence- and ligation-independent cloning (SLIC) method as described elsewhere (Jeong et al, 2012 (link)). The mucolipin1-pEGFP C3 (plasmid #62960; Addgene) construct was a gift from Paul Luzio (Pryor et al, 2006 (link)). pRK5-HA GST RagC WT (plasmid #19304; Addgene) and pRK5-HA GST RagC 75L (plasmid #19305; Addgene) were a gift from David Sabatini (Sancak et al, 2008 (link)). psPAX2 (plasmid #12260; Addgene) and pMD2.G (plasmid #12259; Addgene) lentiviral packaging plasmids were a gift from Didier Trono.
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5

Generation of Fluorescent Histone Constructs

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The GFP control plasmid was obtained from Addgene, pLenti-CMV-MCS-GFP-SV-puro (Addgene plasmid 73582).
The H2BE and H2B constructs were generated as previously described1 and were provided by the Dulac lab. The H2B and H2BE coding sequences were then moved to the pLenti backbone through Gibson assembly. Primers were designed through NEB Builder to separately amplify H2B or H2BE and the pLenti backbone. Each primer contained a non-complementary region on its 5’-end that corresponded to approximately 10 bases on the other template. PCR amplification was performed with Q5 High-Fidelity DNA Polymerase (NEB M0491S). Following DPN1 digestion, fragments were ligated together using NEBuilder HiFi DNA Assembly Master Mix (NEB E2621S) and transformed into NEB 5-alpha Competent E. coli cells (E2621S). Plasmid sequence was verified through Plasmidsaurus long read sequencing.
The H2BE-I39V construct was generated by site-directed mutagenesis of the H2BE backbone using Pfu Turbo HotStart DNA polymerase (Agilent, 600322–51), and primers were created using the DNA-based primer design feature of the online PrimerX tool. Constructs were verified by Sanger sequencing.
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6

Generating SOD2 Mutant MCF7 Cell Lines

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All cell lines were maintained in minimum essential medium (MEM) (Gibco, 11095080) supplemented with 10% fetal bovine serum (FBS) (HyClone, SH30070.03) and 1% penicillin and streptomycin (Thermo Fischer, 15140122). MCF7, T47D, and BT474 parental cell lines were obtained from ATCC. All cell lines were authenticated and negative for mycoplasma contamination. When indicated, cells were cultivated in an ultralow adherence culture dish (Corning, 3262). MCF7 cell lines constitutively expressing SOD2 mutants were obtained by lentiviral transduction and selected using appropriate antibiotics. SOD2 mutants were cloned into lentiviral vector pLenti-CMV-MCS-GFP-SV-puro (29 (link)) (Addgene, 73582), by using an existing SOD2 sequence as previously described (13 (link)) with the addition of nuclear localization signal (NLS), nuclear exclusion signal (NES), or Flag-tag. HEK-293T cells were transfected using Lipofectamine 3000 (Invitrogen, L3000001) together with lentiviral packaging constructs 8.91 and VSVG. Stably transduced MCF7 cells were selected using 1 µM/mL puromycin (Gibco, A1113803).
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7

Generating Drp1 Overexpressing Cells

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Rat Drp1(−/17) and Drp1(16/17) cloned in pEGFP-C1 plasmids were kindly provided by Dr. Stefan Strack, University of Iowa 27 (link). Drp1 coding sequence were subcloned into pLenti-CMV-MCS-GFP-SV-puro (Addgene, 73582) with a N-terminal GFP tag and sequenced to confirm successful cloning of Drp1(−/17) and Drp1(16/17) plasmids. The plasmids were transfected in 293-FT cells for expression and lentiviral particle production. OVCA433 and SKOV3 cells were infected and transduced with the GFP vector control, GFP-Drp1(−/17) and GFP-Drp1(16/17) virus, selected for expression using 5ug/ml Puromycin for 1–2 weeks and sorted for GFP expression by flow cytometry to generate stable Drp1 overexpressing cells.
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8

Generating EGFP-MCOLN1 lentiviral construct

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To obtain EGFP-MCOLN1 construct for lentiviral transduction, human MCOLN1 was amplified by PCR with the following oligonucleotides with overhangs (underlined): 5'-GACACCGACTCTAGAATGGTGAGCAAGGGCGAGGAGC-3' (forward) and 5'-AACTAGTCCGGATCCTCAATTCACCAGCAGCGAATGC-3' (reverse) from Mucolipin1-pEGFP C3 (Addgene plasmid #62960) construct and subcloned into XbaI and BamHI restriction sites of pLenti-CMV-MCS-GFP-SV-puro (Addgene plasmid #73582) vector using sequence-and ligation-independent cloning (SLIC) method as described elsewhere (Jeong et al, 2012) . Mucolipin1-pEGFP C3 (Addgene plasmid#62960) construct was a gift from Paul Luzio (Pryor et al, 2006) . psPAX2 (Addgene plasmid # 12260) and pMD2.G (Addgene plasmid # 12259) lentiviral packaging plasmids were a gift from Didier Trono.
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