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Gotaq green master

Manufactured by Promega
Sourced in United States

GoTaq® Green Master is a ready-to-use solution for PCR amplification. It contains all the necessary components, including GoTaq® DNA Polymerase, dNTPs, MgCl2, and a green dye, for direct loading onto an agarose gel after the PCR reaction.

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4 protocols using gotaq green master

1

RNA Extraction, Reverse Transcription, and PCR

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Total RNA extraction, reverse transcription, and PCR or quantitative PCR (qPCR) were performed as previously described [29 ]. In brief, total RNA was extracted from mouse tissues by using TRIzol reagent (Life Technologies, Carlsbad, CA). Total RNA was pre-treated with an DNase Ι and 5 μg of treated RNA was used as template for first-strand complementary DNA (cDNA) synthesis by using RevertAid RT Reverse Transcription Kit (Life Technologies, Carlsbad, CA). Aliquots of the RT products (50 ng) were used for regular and quantitative RT-PCR. Quantitative RT-PCR (qPCR) was performed using Radiant™ SYBR Green Hi-ROX qPCR Kits (Alkali Scientific, Pompano Beach, FL) in StepOnePlus™ Real-Time PCR Systems (Life Technologies, Carlsbad, CA) and normalized to glyceraldehyde 3-phosphate dehydrogenase (Gapdh). Regular RT-PCR was performed using GoTaq® Green Master (Promega, Madison, WI). The primers used in this study are listed in Additional file 1: Table S1.
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2

Genomic DNA and RNA Extraction for qPCR Analysis

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Genomic DNA was extracted from mouse tissues, C2C12, HEK293 and RAW 264.7 cells. Total RNA was extracted from C2C12 and HEK293 cells by using Zymo Quick-RNA™ MiniPrep kit (Zymo Research Corporation, CA, USA). Real-time PCR were performed as previously described (30 (link),34 (link),35 (link)). Briefly, 20 ng genomic DNA was used as template and RT-PCR products were analyzed for gene editing efficiency. Real-time PCR reactions were performed using Radiant™ SYBR Green Hi-ROX qPCR Kits (Alkali Scientific, Pompano Beach, FL) in LightCycler® 480 System and normalized to glyceraldehyde 3-phosphate dehydrogenase (GAPDH). Regular RT-PCR was performed using GoTaq® Green Master (Promega, Madison, WI, USA).
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3

Cloning and Characterizing OSC Genes

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PmLSS of Patiria miniata was cloned from embryo (2d old) cDNA. PpOSC1 and PpOSC2 were cloned from mixed cDNA of P. parvimensis early developmental stages (embryo 2d, larvae 4d). These were PCR-amplified using primers with attB1 and attB2 adapters and cloned into pDONOR207 (GenR, Invitrogen) through a BP recombination reaction. PCR conditions were as follows: initial denaturation (95°C, 1 min); 30 cycles of 95°C for 30 s; 58°C for 1 min; 72°C for 4 min; final elongation step of 7 min at 72°C. The PCR reaction mix contained: 2μl cDNA; 10 μM of each primer; 250 μM of each dNTP; 1x Phusion buffer; and 1U of Phusion DNA polymerase (NEB). After BP reaction and transformation colony PCR was performed using GoTaq® Green Master (Promega) and positive clones were validated by sequencing. Positive clones were sequenced using three sets of primers covering entire length of the gene (~2.2 Kb). The bacterial OSC candidate was cloned from genomic DNA of Gemmata obscuriglobus DSM5831T strain (GoOSC). Error free clones were then cloned into pYES2 (AmpR) through yeast homologous recombination. All primers used are listed in Supplementary Table 9 (from Sigma-Aldrich).
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4

Detection of ESBL-Producing Bacterial Isolates

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From the sum total of isolates analysed (11 phenotypically confirmed ESBL producers only 6 randomly selected and were subjected to polymerase chain reaction (PCR) analysis. The PCR amplification of bla genes, including blaCTX-M bla AmpC were carried out with GoTaq® Green Master Mix using primers listed in (Table 1). DNA extraction: A single colony from overnight incubated pure culture was suspended into 1ml of distilled water, centrifuged at 14000xg for 2 min., then the supernatant discarded, after that 120μL of lysostaphin (10 mg/L; Sigma) was added. DNA extracted using mini DNA extraction kit (Promega) according to manufacture instructions. PCR were carried out using thermal cycler (Eppendorf Master cycler Gradient) depending on [14 & 15) . The PCR mix was prepared in a volume of 25 μl containing 4 μl DNA template, 12.5 μl Go Taq Green Master (Promega, CA) 2
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