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Axiovert inverted microscope

Manufactured by Zeiss
Sourced in Germany

The Axiovert inverted microscope is a laboratory instrument designed for viewing and analyzing samples from below. It is equipped with a number of objective lenses and features advanced optics to provide high-quality images of specimens. The Axiovert's core function is to facilitate detailed observation and examination of samples under controlled conditions.

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61 protocols using axiovert inverted microscope

1

Trypan Blue Viability Assay

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The viability of cells was determined at the beginning and end of each experimental assay using the trypan blue exclusion assay. In brief, a trypan blue 0.4% solution (Gibco) was added to control and experimental cells to create a 1:1 dilution, which was incubated at room temperature. Each plate was placed on a hemocytometer grid on a Zeiss Axiovert inverted microscope (Carl Zeiss AG, Oberkochen, Germany). Four to six grids (1.0 mm2) were counted and averaged to determine cell number. To verify these results, control and experimental cells were also trypsinized and diluted 1:1 with trypan blue for viability using a BioRad TC20 automated cell counter (Bio-Rad Laboratories, Hercules, CA, USA).
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2

Measuring Ciliary Beat Frequency in ALI Cultures

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CBF recordings were measured from four different points within a 3 mm radius from the center of the ALI culture to avoid influence from liquid meniscus. ALI cultures were not washed prior to CBF measurements. CBF was recorded using SAVA software with a Basler acA645 camera (Basler, Ahrensburg, Germany) mounted on a Zeiss Axiovert inverted microscope (Carl Zeiss, Jena, Germany). SAVA software was used to calculate the CBF from whole field analysis (WFA) to avoid selection bias27 (link).
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3

Multiparametric Imaging of Cellular Dynamics

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Dynamic changes in [Ca2+]mito, [Ca2+]ER, [ATP]cyt, and [ATP]mito were followed in cells expressing the 4mtD3cpv, D1ER, cytAT1.03, and mtAT1.03 (NGFI, ngfi.eu, Graz, Austria), respectively. Culture medium was removed and cells were kept in a HEPES-buffered solution described above. Single cell measurements were performed on a Zeiss AxioVert inverted microscope (Zeiss, Göttingen, Germany) equipped with a polychromator illumination system (VisiChrome; Visitron Systems, Puchheim, Germany) and a thermoelectric-cooled CCD camera (CoolSNAP HQ; Photometrics, Tucson, AZ, USA). Transfected cells were imaged with a 40× oil-immersion objective (Zeiss). Excitation of the fluorophores was at 440 ± 10 nm (440AF21; Omega Optical, Brattleboro, VT, USA), and emission was recorded at 480 and 535 nm using emission filters (480AF30 and 535AF26; Omega Optical) mounted on a Ludl filterwheel. Devices were controlled and data were acquired by VisiView 2.0.3 (Visitron Systems) software and analyzed with GraphPad Prism version 5.0 for Windows (GraphPad Software, La Jolla, CA, USA). Results of FRET measurements are shown as (Ri – Background) + [(Ri – Background) - (R0 - Background)] (whereas R0 is the basal ratio) to correct for photobleaching and/or photochromism.
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4

Multiparametric Imaging of Cellular Dynamics

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Dynamic changes in [Ca2+]mito, [Ca2+]ER, [ATP]cyt, and [ATP]mito were followed in cells expressing the 4mtD3cpv, D1ER, cytAT1.03, and mtAT1.03 (NGFI, ngfi.eu, Graz, Austria), respectively. Culture medium was removed and cells were kept in a HEPES-buffered solution described above. Single cell measurements were performed on a Zeiss AxioVert inverted microscope (Zeiss, Göttingen, Germany) equipped with a polychromator illumination system (VisiChrome; Visitron Systems, Puchheim, Germany) and a thermoelectric-cooled CCD camera (CoolSNAP HQ; Photometrics, Tucson, AZ, USA). Transfected cells were imaged with a 40× oil-immersion objective (Zeiss). Excitation of the fluorophores was at 440 ± 10 nm (440AF21; Omega Optical, Brattleboro, VT, USA), and emission was recorded at 480 and 535 nm using emission filters (480AF30 and 535AF26; Omega Optical) mounted on a Ludl filterwheel. Devices were controlled and data were acquired by VisiView 2.0.3 (Visitron Systems) software and analyzed with GraphPad Prism version 5.0 for Windows (GraphPad Software, La Jolla, CA, USA). Results of FRET measurements are shown as (Ri – Background) + [(Ri – Background) - (R0 - Background)] (whereas R0 is the basal ratio) to correct for photobleaching and/or photochromism.
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5

Microscopic Imaging of Transduced Cells

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Twenty-four hours post transduction, transduced cells were observed directly from the tissue culture plate using a Zeiss Axiovert inverted microscope (Zeiss). Images were taken using an Axiovert digital camera and analysed using an Axio Vision program (Zeiss).
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6

Cell Stiffness Measurement by AFM Indentation

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A JPK Nanowizard scanning force microscope (JPK Instruments) positioned on a Zeiss Axiovert inverted microscope (Carl Zeiss AG) was used to perform indentation experiments to gather quantitative measurements of cell stiffness. Well-defined nano-indenters were constructed by adhering 10 μm diameter silica micro-spheres to tipless cantilevers (Arrow TL2, Nanosensors) with a biocompatible two-part epoxy (Araldite). Poly-L-lysine coated coverslips were placed in a custom microscope slide chamber which was subsequently filled with 2 mL of sterile PBS. 20 μL of the cell suspension (~1,000 cells) was pipetted over the immersed coverslip and left motionless for 5 minutes to allow adequate time for all cells to settle into contact with the coverslip. Probe approach speed (1 μm/s) and max indentation force (1 nN) were kept constant for all measurements. Young’s Moduli were determined by fitting the Hertz model to force-indentation curves using a dedicated software package (JPK SPM Data Processing, JPK Instruments).
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7

Mitochondrial Calcium Dynamics Measurement

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Dynamic changes in [Ca2+]mito were followed in cells expressing 4mtD3cpv. Medium was removed and cells were kept in loading buffer containing 135 mM NaCl, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, 10 mM Hepes, 2.6 mM NaHCO3, 440 μM KH2PO4, 340 μM Na2HPO4, 10 mM D-glucose, 0.1% vitamins, 0.2% essential amino acids, 1% penicillin/streptomycin, pH adjusted to 7.4. Single cell measurements were performed on a Zeiss AxioVert inverted microscope (Zeiss; Göttingen, Germany) equipped with a polychromator illumination system (VisiChrome, Visitron Systems; Puchheim, Germany) and a thermoelectric-cooled CCD camera (Photometrics CoolSNAP HQ, Visitron Systems; Puchheim, Germany). Infected cells were imaged with a 40 × oil-immersion objective (Zeiss). Excitation of the FRET-based genetically encoded Ca2+ indicator 4mtD3cpv was at 440 ± 10 nm (440AF21, Omega Optical; Brattleboro, VT), and emissions were recorded at 480 and 535 nm using emission filters (480AF30 and 535AF26, Omega Optical) mounted on a Ludl filterwheel. Devices were controlled and data were acquired by VisiView 2.0.3 (Visitron Systems) software and analyzed with GraphPad Prism version 5.00 for Windows (GraphPad Software; San Diego, CA). Results of FRET measurements are shown as (Ri – Background) + [(Ri – Background) - (R0 - Background)] (where R0 is the basal ratio) to correct for photobleaching and/or photochromism.
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8

Real-time Ca2+ Dynamics in Organelles

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Dynamic changes in [Ca2+]mito and [Ca2+]ER were followed in cells expressing the 4mtD3cpv or D1ER21 (link). Medium was removed and cells were kept in loading buffer containing 135 mM NaCl, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, 10 mM Hepes, 2.6 mM NaHCO3, 440 μM KH2PO4, 340 μM Na2HPO4, 10 mM D-glucose, 0.1% vitamins, 0.2% essential amino acids, and 1% penicillin–streptomycin, pH adjusted to 7.4. Single-cell measurements were performed on a Zeiss AxioVert inverted microscope (Zeiss, Göttingen, Germany) equipped with a polychromator illumination system (VisiChrome, Visitron Systems, Puchheim, Germany) and a thermoelectric-cooled CCD (charge-coupled device) camera (Photometrics CoolSNAP HQ, Visitron Systems). Transfected cells were imaged with a × 40 oil-immersion objective (Zeiss). Excitation of the fluorophores was at 440±10 nm (440AF21, Omega Optical, Brattleboro, VT) and emission was recorded at 480 and 535 nm using emission filters (480AF30 and 535AF26, Omega Optical) mounted on a Ludl filterwheel. Devices were controlled and data were acquired by VisiView 2.0.3 (Visitron Systems) software and analysed with GraphPad Prism version 5.00 for Windows (GraphPad Software, San Diego, CA). Results of FRET measurements are shown as (Ri−Background)+[(Ri−Background)−(R0−Background)] (where R0 is the basal ratio) to correct for photobleaching and/or photochromism.
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9

In Situ Hybridization of Polysialyltransferase

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The mouse polysialyltransferase ST8SiaIV was subcloned into the pcDNA3 (RRID:Addgene_42208) vector and use as a template for the synthesis of digoxigenin-11-labeled (Roche Molecular Diagnostics, Mannheim, Germany) antisense and sense probes cRNA probe. tg mice and wt littermates were anaesthetized using 2.5% tribromoethanol (Fluka,Germany) and perfused with 4% paraformaldehyde (PFA). Organs were isolated and postfixed, washed and 12 μm frozen sections generated. In situ hybridization on retina, spinal cord and brain sagittal cryosections (12 μm) was done as recently described (Fewou et al. 2005 (link)). Briefly, frozen slice were fixed and hybridization was performed using the appropriate Digoxigenin-11-UTP-labeled antisense or sense cRNA probes at 65°C in 50% formamide, 1% Denhardt’s solution, 0.2% SDS, 0.25 mg/mL ssDNA, 0.25 mg/mL tRNA and 10% hybridization salt (3 M NaCl, 0.1 MPIPES, 0.1 M EDTA) overnight in humid chamber. Unspecific bound were removed by washes in 2X SSC and 0.1X SSC successively. Bound probes were visualized with alkaline phosphatase-conjugated anti-digoxigenin antibody (Roche Molecular Diagnostics Cat# 11093274910,RRID:AB_514497) and nitro blue tetrazolium/bromo-chloro-indolyl phosphate as substrate. Sections were examined with a Zeiss Axiovert inverted microscope (Carl Zeiss, Jena, Germany).
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10

Quantifying FRET Biosensor Dynamics in BAECs

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BAECs transfected with various FRET biosensors or DNA plasmids were starved with 0.5% FBS of Dulbecco's Modified Eagle Medium(DMEM) for 24 hr before 65 dyn/cm2 of HSS application. All images were obtained only on isolated single cell by using Zeiss Axiovert inverted microscope equipped with FRET system. Time lapse fluorescence images were acquired and quantified by MetaFluor 6.2 software (Universal Imaging) and the data of FRET efficiency was analysis by Excel (Microsoft).
Additional details are available in the Supplement.
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