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79 protocols using flt3l

1

Multilineage Progenitor Differentiation Assays

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BM-derived LSKs, LMPPs and CLPs, and thymus-derived DN1a/b and DN1c cells were purified by flow cytometric cell sorting and cultured on either OP9-DL4, OP9-DL1lo or OP9 cells in αMEM media supplemented with 20% FBS (Gibco) and 1% Pen-Strep, as well as 1 ng/ml of IL-7 and 5 ng/ml of Flt-3L for T-/B- assays, and 100 ng/ml of Flt-3L for myeloid/DC assays (R&D Systems). For T-/B-/myeloid/DC assays from thymic DN1a/b and DN1c cells, ~500 cells were used for each lineage assay for each experiment, with the same numbers used for BM LSK controls. For DN2 differentiation kinetics from ETPs, LMPPs and CLPs, ~2000 cells were used for each day of assessment for each experiment. For single-cell and limiting dilution analysis assays, BM CD62L+ LMPPs and CLPs were sorted onto OP9-DL4 cells in 96 well plates at the following doses: 100 cells (12 wells), 30 cells (12 wells), 10 cells (24 wells), 3 cells (24 wells), 1 cell (48 wells), and the T cell progenitor frequency was calculated using ELDA software version 158 .
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2

Multilineage Progenitor Differentiation Assays

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BM-derived LSKs, LMPPs and CLPs, and thymus-derived DN1a/b and DN1c cells were purified by flow cytometric cell sorting and cultured on either OP9-DL4, OP9-DL1lo or OP9 cells in αMEM media supplemented with 20% FBS (Gibco) and 1% Pen-Strep, as well as 1 ng/ml of IL-7 and 5 ng/ml of Flt-3L for T-/B- assays, and 100 ng/ml of Flt-3L for myeloid/DC assays (R&D Systems). For T-/B-/myeloid/DC assays from thymic DN1a/b and DN1c cells, ~500 cells were used for each lineage assay for each experiment, with the same numbers used for BM LSK controls. For DN2 differentiation kinetics from ETPs, LMPPs and CLPs, ~2000 cells were used for each day of assessment for each experiment. For single-cell and limiting dilution analysis assays, BM CD62L+ LMPPs and CLPs were sorted onto OP9-DL4 cells in 96 well plates at the following doses: 100 cells (12 wells), 30 cells (12 wells), 10 cells (24 wells), 3 cells (24 wells), 1 cell (48 wells), and the T cell progenitor frequency was calculated using ELDA software version 158 .
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3

Flt3L Dendritic Cell Culture

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All cells were cultured in RPMI 1640 medium supplemented with glutamine, penicillin, streptomycin, 2-mercaptoethanol (all from Invitrogen), and 10% heat-inactivated fetal calf serum (Source BioScience). For Flt3L DC cultures, medium was additionally supplemented with 150 ng/ml Flt3L (R&D Systems). For the B3Z-Syk reporter experiments, the cells were switched to AIM-V medium (Invitrogen).
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4

Isolation and Purification of Murine Plasmacytoid Dendritic Cells

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BM cells were isolated from femurs and tibias of 6–8-wk-old C57BL/6 mice, and red blood cells were lysed using ACK lysis buffer (0.15 M NH4Cl, 1 mM KHCIO3, and 0.1 mM Na2EDTA, pH 7.3). BM cells (106/ml) were seeded on RPMI 1640 medium containing 10% FBS (HyClone) and 50 ng/ml Flt3L (R&D Systems) and cultured for 5–7 d. Every 2 d, half of the media were replaced by fresh RPMI containing 10% FBS and 50 ng/ml Flt3L. Before use, suspension cells were sorted by FACS (Aria II; BD), and CD11cint/B220+/CD11b pDCs were collected.
Splenic pDCs were prepared as described previously (Vremec et al., 2000 (link)). In brief, spleens were minced and digested with collagenase D (1 mg/ml; Sigma-Aldrich) in RPMI 1640 at 37°C for 30 min. Digested cells were passed through a nylon mesh cell strainer (BD), and incubated with anti–PDCA-1 microbeads (Miltenyi Biotec). Subsequently, enriched pDCs were labeled with CD11c, mPDCA-1, B220, and Siglec-H for FACS sorting, and the CD11cint/B220+/mPDCA-1+/Siglec-H+ population was harvested as splenic pDCs.
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5

Murine and Human Cytokine Protocol

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Recombinant murine (rm) SCF, IL-1α, IL-3, IL-7, IL-15, FLT3-L, G-CSF, M-CSF, and GM-CSF and recombinant human (rh) SCF, IL-7, IL-15, FLT3-L, GM-CSF and TNFα were purchased from R&D Systems.
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6

Induced Leukocyte Stem Cell Differentiation

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Induced leukocyte stem cells (iLS cells) were used to prepare two different immune states of CD19 LMPP and CD19+ pro-B cells [8 (link)]. The LMPP state of the iLS cells was maintained on Tst-4 stromal cells in the presence of 10 ng/mL IL-7 (R&D Systems, USA), stem cell factor (R&D), Flt-3L (R&D) and 40 nM 4-OHT (Sigma-Aldrich, USA). The pro-B state was induced by culturing the cells on Tst-4 cells with 5 ng/mL IL-7 in the absence of 4-OHT for 7 days.
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7

Ex Vivo Expansion of Embryonic AGMs

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AGMs were dissected from E11.5 embryos. AGMs were infected (see below) and cultured as described by Gao et al. (2013) (link). Intact AGMs were cultured for 4 days on Durapore filters (Millipore) at the air-liquid interface in IMDM+ (Iscove's modified Dulbecco's medium) (Gibco) supplemented with 20% fetal bovine serum (FBS; Gemini), 4 mM L-glutamine (Gibco), 1% penicillin/streptomycin (Cellgro), 0.1 mM mercaptoethanol, 100 ng/ml interleukin-3 (R&D Systems), 100 ng/ml Flt3L (R&D), and 1.5% conditioned medium from a Kit ligand-producing Chinese hamster ovary cell line.
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8

Establishing Primary and Cell Line Cultures

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Cell lines were obtained from American Type Culture Collection and tumor cells from bone marrow (BM) aspirates following written informed consent under an Institutional Review Board approved protocol. Cells were cultured in RPMI1640 (Life Technologies) with 10% fetal bovine serum (FBS), 2 mM L-glutamine, penicillin (100 U/ml), streptomycin (100 μg/ml) and cytokines (10 ng/ml IL7, FLT3-L and SCF; R&D Systems, Minneapolis, MN). Cell lines were cultured similarly without cytokines. OP9 murine stromal cells were expanded in DMEM with growth additives before co-culture with primary ALL blasts.
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9

Eosinophil Differentiation from Murine Bone Marrow

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Eosinophils were obtained from BM precursors as described in the ref. 41 (link). In brief, BM cells were collected from the femurs and tibiae of WT C57BL/6J mice by flushing the opened bones with PBS (Euroclone, Pero, Italy). The BM cells were cultured at 106/mL in medium containing RPMI 1640 (Invitrogen) with 20% FBS (Cambrex), 100 IU/mL penicillin and 10 μg/mL streptomycin (Cellgro), 2 mM glutamine (Invitrogen), 25 mM HEPES and 1x nonessential amino acids and 1 mM sodium pyruvate (Life Technologies), and 50 μM 2-ME (Sigma-Aldrich) supplemented with 100 ng/mL stem cell factor (SCF; PeproTech) and 100 ng/mL FLT3 ligand (FLT3-L; PeproTech) from days 0 to 4. On day 4, the medium containing SCF and FLT3-L was replaced with medium containing 10 ng/mL recombinant mouse IL-5 (R&D Systems) only. On day 8, the cells were moved to new flasks and maintained in fresh medium supplemented with rmIL-5. BM eosinophils were stimulated with BM serum (1:20) with or without the addition of anti-CCR3 (CD193, Clone: J073E5, 3 μg/well, cat 144503, Biolegend) or anti-IL-17A antibodies (clone: TC11-18H10.1, 3 μg/well, cat 506902, Biolegend).
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10

Bone Marrow Cell Culture and Stimulation

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RPMI and DMEM media (Invitrogen, Carlsbad, CA, USA) were used for all mouse and human cultures, respectively. Media were supplemented with 10% FCS, L-glutamine, 2ME, HEPES and Pen/Strep; all from Invitrogen (Carlsbad, CA, USA). For bone marrow cultures, cells were isolated from the femurs of EμTCL1-Tg and age-matched WT controls. Human bone marrow cryosamples were thawed and washed in sterile PBS. Bone marrow cells were seeded at 105 cells/ml in 48-well cell culture plates (BD, San Diego, CA, USA). For lymphocyte cultures, cells were seeded at 106-107 cells/ml in 24- or 48-well cell culture plates (BD, San Diego, CA, USA). All cultures were incubated at 37°C and 5% CO2. Stimulatory factors were used at the following concentrations: Flt3L, 100-400ng/ml (R&D Systems, Minneapolis, MN, USA); CpG B ODN 7909, 1μM and CpG C ODN 2395, 1μM (Invivogen, San Diego, CA, USA). Optimal CpG stimulations were conducted for 6-12 hrs. In vitro neutralization of TNF and transforming growth factor beta (TGF-β) was achieved using purified anti-mouse TNF (MP6-XT22), anti-mouse TGF-β (TW7-20B9), anti-human TNF (mAb11) and anti-human/mouse TGF-β (19D8) (Biolegend, San Diego, CA, USA), all used at 1μg/ml.
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