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49 protocols using anti pcna

1

Immunofluorescence and Immunohistochemistry Analysis of Podocytes

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Cryosections with a thickness of 4 μm were prepared using a cryostat and were fixed in 4% paraformaldehyde for 15 min. After blocking, the cryosections were incubated with primary antibodies and then with a fluorescein Cy3-FITC-labelled secondary antibody (1:100; Proteintech, Wuhan, China). Fluorescence images were recorded using a TCS SP5II confocal microscope (Leica, Bensheim, Germany). The following primary antibodies were used: anti-desmin (1:100; Santa Cruz Biotechnology, Inc., Dallas, TX, USA), anti-podocalyxin (1:100; R&D Systems, Minneapolis, MN, USA), and anti-snail2 (1:100, Proteintech). Podocytes were seeded onto clean glass coverslips, fixed with 4% paraformaldehyde, and permeabilised with 0.2% Triton X-100. The slides were incubated with an anti-PCNA (1:100, Proteintech), anti-synaptopodin (1:100; Proteintech), anti-CDK4 (1:100; Abcam, Cambridge, UK), anti-P-YAP (1:100; Cell Signaling Technology, Danfoss, MA, USA), or anti-snail2 (1:100, Proteintech) antibody.
For immunohistochemistry analysis, after deparaffinisation, rehydration, antigen retrieval, and blocking, the sections were incubated with an anti-PCNA (1:100), anti-CDK4 (1:100), anti-desmin (1:100), anti-YAP (1:100, Proteintech), or anti-cyclin D1 (1:100, Cell Signaling Technology) primary antibody and then with a horseradish peroxidase-labelled secondary antibody (Beyotime, Shanghai, China).
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2

Immunohistochemical Analysis of FOXD1, KI67, PCNA, and GLUT1

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After fixing, embedding, sliding, and deparaffinizing, tissue sections were blocked with 3% H2O2 and 5% BSA. Then sections were incubated with anti-FOXD1(Invitrogen, Cat No. PA5-35145), anti-KI67 (Proteintech, Cat No. 27309-1-AP), anti-PCNA (Proteintech, Cat No. 10205-2-AP), and anti-GLUT1(abcam, Cat No. ab115730) antibodies at 4 °C overnight. After washing with PBS, immunohistochemical secondary antibody was applied to the sections for 1 h at room temperature, followed by DAB staining, hematoxylin re-staining, and imaging. The results were evaluated blindly by two independent pathologists.
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3

Histological and Immunofluorescent Analysis of Vascular Tissues

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Vascular tissues were collected and fixed overnight in 4% paraformaldehyde (Solarbio, China), dehydrated, and embedded in paraffin. Sections were cut to a thickness of 4 μm, and an HE automatic staining instrument (HistoCore SPECTRA ST, Leica, Germany) was used to perform the HE staining. Images were taken using a digital slice scanner (KFBIO, China). The degree of stenosis and the neointima/media ratio were calculated as previously described (36 (link)).
For tissue immunofluorescence staining, paraffin sections were dewaxed in xylene and antigen-retrieved in citrate (Solarbio). Sections were blocked in QuickBlock™ Blocking Buffer for Immunol Staining (Beyotime) for 1 h at room temperature and incubated with anti-α-SMA (1:200; Proteintech, Cat# 67735-1-Ig) and anti-PCNA (1:100; Proteintech, Cat# 60097-1-Ig) primary antibodies overnight at 4°C. Fluorescent secondary antibodies Alexa Flour 594-conjugated goat anti-rabbit IgG (1:200, Proteintech, Cat# SA00013-4) and Alexa Flour 488-conjugated goat anti-mouse (1:200, Proteintech, Cat# SA00013-1) were used to create fluorescent signals. Sections were observed with a laser confocal microscope (Nikon, AXR, Japan).
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4

Protein Expression Analysis by Western Blot

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Proteins were isolated with RIPA lysis buffer (Beyotime, Jiangsu, China) after 48h of transfection. Protein lysates were separated by 10% sodium dodecyl sulfate-polyacrylamide gels and then transferred to nitrocellulose membrane (Beyotime, Jiangsu, China). nitrocellulose membrane with proteins were immunoblotted overnight at 4°C with primary antibodies: anti-PCNA (Proteintech, USA), anti-Wnt7b (Proteintech, USA), β-catenin (Proteintech, USA), Gsk-3β (Proteintech, USA), cyclin D1 (Abcam, USA), C-myc (Wanlei, China). Subsequently, the membranes were incubated in secondary antibodies for 1h at room temperature. Dilutions of all antibodies used in this study were 1:1000. Odyssey Infrared scanning system (Li-Cor, Lincoln, NE, USA) was used to visualize protein bands.
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5

Lung Tissue Histological Analysis in Mice

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The right lung of each mouse was sampled, fixed in 4% paraformaldehyde, and processed using standard techniques by staining sections of paraffin-embedded tissue for H&E, immunohistochemistry, and immunofluorescence. For immunohistochemistry, the primary antibody rabbit polyclonal anti-PCNA (Proteintech, Rosemont, IL, USA) was used. For Wnt5a immunofluorescence staining, sections of mouse lungs were deparaffinized, rehydrated, and subjected to heat-induced epitope retrieval. After washing and blocking, the slides were incubated overnight with mouse anti-Wnt5a primary antibody at 4°C. On the following day, incubation with fluorescein isothiocyanate–conjugated antimouse IgG (Jackson ImmunoResearch Laboratories, West Grove, PA, USA) took place for 1 hour in the dark at room temperature. Sections were subsequently washed three times, and DAPI nuclear stain was applied for fluorescence microscopy. For dual immunofluorescence staining, primary antibodies, including antineutrophils (mouse Ly6G; Abcam, Cambridge, UK) and T cells (rabbit CD3; Proteintech), were used to assess inflammatory cell populations.
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6

Western Blot Analysis of Protein Expression

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Whole protein was extracted from transfected cells after cells were lysed using the RIPA buffer containing PMSF and phosphatase inhibitors. After quantifying by the BCA Protein Assay Kit (Beyotime, Shanghai, China), the proteins were resolved by using 10% sodium dodecyl SDS-PAGE, and then proteins were transferred to PVDF membranes. For clearer western blot bands, the blots were cut prior to hybridisation with antibodies. Membranes were incubated with specific primary antibodies ( anti-TUBA1C (Proteintech, Wuhan, China), anti-E2F1 (Proteintech), anti-ki-67 (Proteintech), anti-PCNA (Proteintech), GAPDH (Proteintech), and β-actin (Proteintech)) diluted in antibody diluent at 4 °C for 12 h. Then incubating the membranes with a secondary antibody for 2 h. The western blot bands were scanned by Amersham Imager 600 and analyzed by Image J software.
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7

Western Blot Analysis of PCNA Protein

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Proteins were extracted from colon tissues using RIPA lysis buffer with protease inhibitors. The samples were resolved in SDS-PAGE and transferred onto NC membranes, Membranes were blocked in 5% milk for 1 hour and then incubated with anti- PCNA (CST, #13110, 1:1000 dilution) and anti-β-actin (Proteintech, #66009-1-Ig, 1:1000 dilution) antibodies overnight at 4 °C. After wash, membranes were incubated with Anti-rabbit (BOSTER, #BA1054) or anti-mouse (BOSTER, #BA1050) secondary antibody at room temperature for 1h. Finally, after adding ECL (Thermo, #A38555) substrates, the protein bands were analyzed by Chemdoc (Bio-rad).
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8

Kinase inhibitor LY294002 in cancer research

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Kinase inhibitor LY294002 was purchased from Beyotime Institute of Biotechnology (Shanghai, China). CCK-8 kit was purchased from Dojindo Molecular Technologies (Kumamoto, Japan). FUT7 expression construct and the blank vector were designed and synthesized by GenePharma (Shanghai, China). anti-AKT, anti-EGFR, anti-mTOR and anti-PCNA antibodies were purchased from Proteintech (Wuhan, China); anti-pEGFR, anti-pAKT (ser473) and anti-pmTOR (ser2448) antibodies were purchased from Bioworld Technology, Inc (St Louis Park, MN, USA); anti-FUT7 monoclonal antibody was purchased from Sigma-Aldrich Co. (St Louis, MO, USA) and anti-sLeX antibody was purchased from Merck Millipore (Billerica, MA, USA).
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9

Immunohistochemical Analysis of Tumor Samples

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Tumors were fixed in 4% paraformaldehyde immediately after removal from nude mice. After tissue embedding, slicing, dewaxing, and incubating with antibodies, images were taken at the proper magnification using a microscope (Leica Microsystems, Mannheim, Germany). Antibodies used in this experiment were, anti-PCNA (10205-2-AP, Proteintech, USA), anti-SRSF1(sc-33652, Santa Cruz Biotechnology, China) and anti-β-catenin (51067-2-AP, Proteintech, USA).
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10

Investigating Tumor Growth and Metastasis

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BALB/c-nu mice (4–6 weeks old) were purchased from the Medical Experimental Animal Center of Guangdong Province (Guangzhou, China) and housed in barrier facilities on a 12 h light/dark cycle. For the xenograft tumor growth model, lenti-miR-16 or lenti-vector CNE-1 cells (1 × 106) were subcutaneously inoculated in the right dorsal flank of the mice. Tumor size was measured every 3 days, and tumor volumes were calculated. After two weeks, the mice were sacrificed, and the tumors were excised, weighed, and paraffin-embedded. Sections were cut and subjected to immunohistochemistry with anti-Ki67 (1:400; Proteintech, Wuhan, China) and anti-PCNA (1:400; Proteintech) antibodies. For the lung metastatic colonization model, lenti-miR-16 or lenti-vector CNE-1 cells (1 × 106) were intravenously injected via the tail lateral vein. Five weeks later, the mice were sacrificed, and the lung tissues were excised, paraffin-embedded, cut into slices, and stained with hematoxylin and eosin. The number of macroscopic and microscopic lung tumor nodules was counted.
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