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7 protocols using avidin biotin peroxidase complexes

1

Immunohistochemical Staining of Key Markers

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Rabbit antibodies (Abs) against human Ki67 (Ki67, Thermo Fisher Scientific, Inc, Waltham, MA), human CD44 (CD44, Acris Antibodies, Inc, Rockville, MD), mouse CD31 (CD31, Abcam, Inc, Cambridge, MA), or alpha smooth muscle actin (specific to human and mouse, α-SMA, Acris Antibodies, Inc, Rockville, MD), and biotinylated anti-rabbit Ig secondary Abs (Vector Laboratories, Burlingame, CA) were used for IHC staining. Reagents used were avidin-biotin-peroxidase complexes (Vector Laboratories) and Sigma FAST 3,3-diaminobenzidine tablets (Sigma-Aldrich).
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2

Immunohistochemical Analysis of Periodontal Tissues

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Rat periodontal tissues were fixed in 4% PFA for 48 h and decalcified with 12% ethylenediaminetetraacetic acid (EDTA, pH 5.6) at room temperature for 21 days. The sections were paraffin embedded and cut serially in the sagittal plane from the most lingual side. Semi-serial 5-μm sections of first molars were prepared and stained according to immunohistochemistry protocols. After antigen retrieval by heat-induced epitope retrieval, deparaffinized sections were immersed in 0.6% H2O2 for 20 min to quench endogenous peroxidase activity. Sections were then blocked in 5% BSA for 30 min and incubated with antibodies against HIF-1α (0.05 μg/ml), VEGF (0.05 μg/ml), or RUNX2 (0.05 μg/ml) (all from Abcam) overnight at 4°C. Sections were then incubated with goat anti-rabbit or mouse IgG antibodies for 1 h at room temperature and reacted with avidin-biotin-peroxidase complexes (Vector Laboratories, USA) in PBS for 30 min. After colour development with 0.05% 3,3′-diaminobenzidine, sections were counterstained with haematoxylin.
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3

Immunohistochemistry Protocol for FFPE Sections

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Immunohistochemistry was carried out using formalin-fixed paraffin-embedded (FFPE) sections as described [28 (link)]. The sections were blocked in phosphate buffered saline-tween 20 (PBST) using 10% normal goat serum. The primary antibodies were diluted in PBST containing 5% goat serum. The primary antibodies used were: anti-AFP (Santa Cruz; rabbit polyclonal; 1:50); anti-CD31 (Dako; mouse monoclonal; 1:50); anti-PCNA (Cell Signaling; mouse monoclonal; 1:100); anti-OPN (Millipore; rabbit polyclonal; 1:500); anti-CyclinB1 (1:100, rabbit polyclonal; Cell Signaling). Secondary antibodies were diluted in PBST containing corresponding 2.5% blocking serum. The signals were developed by avidin-biotin-peroxidase complexes with a DAB substrate solution (Vector laboratories). Images were analyzed using an Olympus microscope.
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4

Histological Evaluation of UCC and Xenograft Tissues

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For histological evaluation, a portion of each UCC patient specimen, xenograft tumor tissue, and mouse lungs were fixed in 10% buffered formalin for paraffin embedding. Paraffin-embedded tissue was sectioned at 5-μm thickness and mounted onto Superfrost Plus® slides (StatLab Medical Products, Pompano Beach, FL). Sections were used for H&E and IHC staining. For IHC staining, tissue slides were deparaffinized, rehydrated, and blocked for endogenous peroxidase activity. After high-temperature antigen retrieval in 0.01 M sodium citrate solution (pH 6.0), slides were serum-blocked, and immunostained using pre-determined concentrations of primary antibodies (α-SMA, 1 to 300; Ki67, 1 to 200; CD44, 1 to 75; and CD31, 1 to 200) overnight at 4° C. After rinsing the sections in phosphate-buffered saline (PBS), the slides were incubated for 1 hr at room temperature with biotinylated secondary Abs and followed by incubation with avidin-biotin-peroxidase complexes for 1 hr at room temperature according to the manufacturer's instructions (Vector Laboratories). The sections were developed with a 3,3′-diaminobenzidine substrate (Sigma-Aldrich), counterstained with hematoxylin and coverslipped with Permount (Fisher). All images were captured by a deconvoluting microscope using SlideBook 6.0 software (Intelligent Imaging Innovations, Inc, Denver, CO).
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5

Immunohistochemical Analysis of Crown-Like Structures

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Parametrial fat tissue was dissected and fixed in 10% buffer-formalin overnight at room temperature and embedded in paraffin. Four micron-thick sections were cut, deparaffinized in xylene, rehydrated in a graded ethanol series, and used for staining. Immunohistochemical staining was performed using a standard protocol. Serial sections were microwave-treated in 10 mmol/l citrate buffer (pH 6.0) and then incubated for 1 h at room temperature with primary antibodies, mouse monoclonal F4/80 (Abcam, Cambridge, MA). After rinsing in PBS buffer containing 0.25% Triton X-100 (pH 7.2), sections were incubated with secondary biotinylated goat anti-mouse (Abcam) antibodies. Avidin-biotin peroxidase complexes (Vector Laboratories, Burlingame, CA) were added followed by visualization with 3.3′-diaminobenzidine tetrachloride (Vector). All sections were counterstained with Harris hematoxylin. For each sample, the numbers of crown-like structures within the entire section were counted by two independent observers using a light microscope and normalized for the total section area as expressed as CLS per mm2 of tissue section.
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6

Immunohistochemical Analysis of Tumor Markers

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All specimens were formalin-fixed and paraffin-embedded. Hematoxylin and eosin (H&E) staining and immunohistochemistry were performed as described previously (Hwang et al, 2002). Tissue sections were blocked for 30 min with 3% normal horse serum diluted in PBS. The sections were then blotted and incubated with primary mouse MMP9, PCNA, Ki-67, and Bax monoclonal antibodies diluted 1:200 in blocking serum for 4 h at room temperature, or primary rabbit anti-VEGF and cleaved caspase-3 polyclonal antibody diluted 1:100 dilution in blocking serum overnight at 4 oC. The next day, the slides were washed three times for 5 minutes each in PBS and incubated in biotinylated anti-mouse or anti-rabbit antibodies for 2 h, and then washed again in PBS. The avidinbiotin-peroxidase complexes were formed (ABC, Vector Laboratories, Inc., Burlingame, CA) and the peroxidase reaction developed with diaminobenzidine and peroxide. The tissue sections were then counterstained with hematoxylin, mounted with aqua-mount, and evaluated using a light microscope (200 × magnification, Olympus, Tokyo, Japan).
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7

CD93 Immunohistochemical Staining Protocol

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CD93 staining was performed using a standard protocol on 4 μm sections from formalin-fixed paraffin-embedded tissue blocks as previously described [24 (link)]. Sections were subsequently incubated with a primary goat anti-human C1qR1/CD93 antibody (0.2 μg/mL; R&D Systems) overnight at 4 °C and then with a horse secondary biotinylated affinity-purified anti-goat IgG antibody (1.5 μg/mL; Vector Laboratories, Ltd., Burlingame, CA, USA). Avidin-biotin peroxidase complexes (Vector laboratories) were added followed by visualization with 3.3′-diaminobenzidine (Vector Laboratories). Sections were counterstained with haematoxylin (Vector laboratories) and rehydrated before coverslips were added. Microscopy of the sections was performed using a Zeiss light microscope (Carl Zeiss Microscopy GmbH, Göttingen, Germany) along with the Zen lite software (Zeiss).
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