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149 protocols using brain derived neurotrophic factor (bdnf)

1

BDNF Neuron Culture Treatment Protocol

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For most experiments, BDNF (Sigma) was added to cultured neurons at 12 DIV (Days in vitro) for 4 h. Cells were collected at indicated time points. In most cases, the concentration of BDNF was 25 ng/ml, unless indicated in the text or figures. For long-term (more than 1 day) treatment, BDNF was added every day at the same concentration. For the K252a experiments, 0.2 μM K252a (Sigma) was added to the cultured neurons 1 h before BDNF treatment and was maintained in the medium during treatment. For TrkB Fc-IgG experiments, 1 μg/ml TrkB Fc-IgG and control IgG (R&D Systems) were added to the cultured neurons 1 h before BDNF treatment and was retained in the medium during treatment. Acute and gradual BDNF treatment was as previously described (Ji et al., 2010 (link)). For actinomycin-D experiments, 0.2 μM actinomycin D (Sigma) was added to the cultured neurons 0.5 h before BDNF treatment and was retained in the medium with BDNF for 2 h. For experiments with ISRIB (Integrated Stress Response inhibitor, trans-N,N′-(Cyclohexane-1,4-diyl)bis(2-(4-chlorophenoxy)acetamide, trans-N,N′-1,4-Cyclohexanediylbis[2-(4-chlorophenoxy)-acetamide), cultures were incubated with 50 nM ISRIB (Sigma) for 1 h prior to addition of BDNF.
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2

Functionalized Substrates for Neuronal Culture

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Single F-PCL and MP-PCL substrates were placed in 24-well culture plates, sterilized by immersion in ethanol (Fluka), washed twice in H 2 O, dried in a laminar flow hood, and further sterilized by UV irradiation for 2 h. For BDNF attachment, BDNF (Sigma) was diluted to the final concentration of 300 ng/ml in culture medium, consisting of neurobasal, 2% B27 supplement, 2 mM glutamine, and antibiotics (Life Technologies) and incubated for 14 days in a cell culture incubator (37 °C, 5% CO 2 , 95% humidity). For BDNF release studies, the medium was collected and replaced with fresh culture medium at the indicated time points. BDNF levels were determined by an Elisa assay (BDNF Emax® ImmunoAssay System, Promega), according to the manufacturer's protocol. For the culture of primary neurons, substrates were coated by adding Poly-D-Lysine (PDL, Sigma) to a final concentration of 0.1 mg/mL after the exposure to BDNF for 14 days. Substrates were kept in the PDL solution overnight in a cell culture incubator. Before plating the cells, substrates were washed in sterile H 2 O. Controls were subjected to the same procedure with the addition of equivalent volumes of the vehicle (H 2 O) instead of BDNF.
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3

In Vitro Spinal Cord Injury Model

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To mimic injured conditions of spinal cord injury in vitro, primary neurons isolated from the brain (NC) were cultured with tert-butyl hydroperoxide (t-BHP, 200 μmol/L) (Sigma), for 4 h. Then the injured neurons (5 × 106 cells/well) were cultivated without (NT group) or with (MNT group) MDSCs (1 × 106 cells/well) or treated with XAV939 (8 μM, MNT + XAV939) (MedChem Express, NJ, USA). The supernatant was used to measure BDNF, and injured neurons were subjected to staining and apoptosis.
To confirm the effects of brain-derived neurotrophic factor (BDNF) on the MDSCs, we set up an induced group in which MDSCs were cultured with 20 ng/mL BDNF (B3795, Sigma, USA) and an MDSC group without BDNF as a control. The morphological changes of the cells were observed under a phase-contrast microscope, and neuron-specific enolase (NSE) staining was performed after 6 days.
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Modeling Hypoxia Effects on Neuronal Cultures

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Hypoxia modeling was performed on day 14 of culture development in vitro (DIV) by replacing the normoxic cultural medium with a medium containing low oxygen for 10 min. The oxygen was displaced from the medium in sealed chamber in which the air was replaced with an inert gas (argon). The oxygen concentration decreased from 3.26 mL/L (normoxia) to 0.37 mL/L (hypoxia) [18 , 19 ].
All cultures were divided into the following experimental groups: (1) BDNF (1 ng/mL) (Millipore, GF029, USA) (N = 9); (2) k252a (150 nM) (Sigma, K2015, Germany), an inhibitor of the Trk receptors (N = 9); and (3) BDNF (1 ng/mL) plus k252a (150 nM) (N = 9) added to the medium 20 min before hypoxia. In the control group (N = 9), hypoxia was induced without additional treatment.
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5

Neurotrophic Factors and Neurite Outgrowth

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To evaluate the direct effects of NTs on neurite outgrowth, primary cultures and DRG explants were treated with SFM with or without neurotrophic factors NGF (50 ng/mL, 2.5S beta-NGF, Sigma) (Malcangio et al., 1997; Turney et al., 2016; Naletova et al., 2019), BDNF (10 ng/mL, Sigma) (Santos et al., 2016) and NT-3 (10 ng/mL, Sigma) (Malcangio et al., 1997; Turney et al., 2016) for 24, 48 and 72 hours. To test for the lack of dependence on these neurotrophic factors neutralizing antibody against NGF (1 µg/mL, Sigma), BDNF (1 µg/mL, Sigma) and NT-3 (1 µg/mL, Sigma) were added to culture medium. To evaluate whether BDNF specifically activates satellite cells or both satellite and Schwann cells, the two glial populations were cultured in Dulbecco’s Modified Eagle Medium (DMEM) (1 g/L glucose), 10% FBS, 1% penicillin/streptomycin with 63 ng/mL of glial growth factor and 10 µM of forskolin with or without BDNF. The cultures were maintained in a humidified incubator at 37°C and 5% CO2 for 72 hours. The cell cultures were then processed for immunofluorescence.
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6

Differentiation of iPSCs into Neural Progenitors

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Prior to differentiation, iPSC lines were adapted to feeder-free conditions using Matrigel (BD) and EBs were formed. After 4 days, neural induction was initiated as previously described (32 (link),40 ). Briefly, EBs were plated onto Geltrex-coated plates in Neural Induction medium 1 (DMEM/F12 supplemented with L-Glutamine (2 mM), N2 supplement, bovine serum albumin (BSA) (1 mg/ml), Y27632 (10 μM; Tocris), SB431542 (10 μM, Tocris), Noggin (200 ng/ml) and antibiotic/antimycotic (1% v/v)). After 4 days, medium was changed to Neural Induction medium 2 (as NI1, without SB431542 and Noggin and with addition of SHH C24II (200 ng/ml; SHH C24II; R&D Systems). After 6 days, medium was supplemented with FGF8a (100 ng/ml; R&D Systems), Heparin (5 μg/ml; Sigma), BDNF (20 ng/ml) and Ascorbic Acid (200 μM; Sigma)) and incubated for 7 days, until the appearance of dense neural rosette structures. Neural progenitor cells were manually selected and re-plated onto Poly-D-Lysine/Laminin-coated plates in final differentiation medium (DMEM/F12 supplemented with L-Glutamine (2 mM), N2 supplement, BDNF (20 μg/ml), GDNF (20 μg/ml), N6, 2′ -O-dibutyryladenosine 3′,5′ -cyclic monophosphate sodium salt (dcAMP, 0.5 mM; Sigma), Laminin (1 μg/ml) and antibiotic/antimycotic (1% (v/v)). Neurons were matured for 2 weeks in this medium before experimental procedures were carried out.
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7

BDNF and 7,8-DHF Effects on Cocaine CPP

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Rats were implanted with a bilateral intra-VTA cannula, as described above. Seven days after surgery, the effect of intra-VTA BDNF on cocaine CPP was assessed. In the BDNF group, BDNF (Sigma Aldrich; 25 ug in 0.5 ul saline) was injected into the VTA, over 3 min. A separate vehicle group received saline injections of the same volume. One day after BDNF or saline injection, cocaine (10 mg/kg, i.p.) place preference was run, as described above.
Opioid-naïve rats received systemic 7,8-dihydroxyflavone injections (Tocris Bioscience, Bristol, UK, 10 mg/kg, i.p.), a potent trkB agonist, 1 h prior to cocaine conditioning sessions. Control animals received vehicle (saline, i.p.) injections prior to cocaine conditioning sessions.
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8

Hippocampal Slice Preparation and BDNF Treatment

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Hippocampal slices of 250-µm-thick were prepared as described previously (Drew et al., 2011 (link)). Briefly, 250-µm-thick horizontal brain sections were prepared on a vibratome (Leica VT1200S) in dissection solution (in mM: sucrose 195, NaCl 10, KCl 2.5, NaH2PO4 1, NaHCO3 25, glucose 10, MgCl2 5, MgSO4 1, CaCl2 0.5) from brain of 8 week-old Wt C57Bl/6J mice. Hippocampal regions were promptly cut out from ~10 horizontal brain sections and then immediately transferred to an interface chamber and allowed to recover for 1 h at 31–32 °C. Slices were then transferred to another chamber and incubated for 2 hours with pre-oxygenated artificial cerebrospinal fluid (aCSF) (bubbled with 5% CO2/95% O2) that had the following composition (in mM): NaCl 124, KCl 2.5, NaH2PO4 1, NaHCO3 25, Glucose 10, MgSO4 1, CaCl2 2. In the BDNF treatment group, the aCSF also contained 50 ng/ml of BDNF (#B3795, Sigma-Aldrich). Slices were removed immediately after 2 hour incubation and total RNAs from the BDNF or sham treated slices were extracted using TRIzol (Invitrogen), following manufacturer’s instruction.
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9

BDNF and TrkB Modulation in Neuroscience

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All reagents were dissolved in 1 percent DMSO in saline. Vehicle (VEH) refers 1 percent DMSO in saline. Human BDNF (Peprotech, Rocky Hill, NJ, USA) was microinjected at 2 μg/μl (i.e. 1 μg/0.5 μl/side), a dose within the order of magnitude used in the literature (0.24–2.5 μg/0.5 μl/side) (Lu et al. 2004 (link); Graham et al. 2007 (link); Berglind et al. 2009 (link)). The TrkB selective and non-competitive antagonist ANA-12 (SML0209, Sigma-Aldrich, St Louis, MO, USA) (Cazorla et al. 2011 (link)) was microinjected in combination with BDNF or alone at 0.2 pg/μl (i.e. 0.1 pg/0.5 μl/side (Shirayama et al. 2015 (link)). We also tested a higher dose of [ANA-12] = 2 pg/μl (i.e.1 pg/0.5 μl/side), but this dose decreased spontaneous locomotion (data not shown). Human recombinant TrkB/Fc chimera (T8694; Sigma-Aldrich, St Louis, MO, USA), a soluble scavenger form of the TrkB receptor, was microinjected in combination with BDNF or alone at 1.3 μg/μl (i.e. 650 ng/0.5 μl/side) (Revest et al. 2014 (link)).
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10

Modulating Neuronal Activity with BDNF and ANA-12

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Recombinant BDNF (1 ng/mL, Merck, GF301, Germany), ANA-12 (a selective TrkB receptor blocker, 1 μM, Sigma-Aldrich, SML0209, Germany) or BDNF (1 ng/mL) and ANA-12 (1 μM) in combination were added to the culture medium daily beginning on the third day of culture development in vitro (DIV) (Figure 1).
Analyses of spontaneous bioelectrical and calcium activities, which included defining the internal neural network structure, morphological studies, and evaluation of the dynamics of functional characteristics of the mitochondrial respiratory chain in neural cells, were performed on DIV 7, 10, and 14.
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