The largest database of trusted experimental protocols

Sonic ruptor 400

Manufactured by Omni International
Sourced in United States

The Sonic Ruptor 400 is a high-performance laboratory homogenizer designed for the efficient disruption and homogenization of a wide range of biological samples. This device utilizes ultrasonic waves to break down cellular structures, facilitating the extraction and analysis of intracellular components.

Automatically generated - may contain errors

9 protocols using sonic ruptor 400

1

ChIP-seq of Flag-Foxd4l1.1 and HA-Smad2/3

Check if the same lab product or an alternative is used in the 5 most similar protocols
ChIP assay was performed as in a previous study [25 (link)]. The mRNAs encoding Flag-Foxd4l1.1 and HA-Smad2/3 (1 ng/embryo) were injected at the one-cell stage. The injected embryos were harvested at stage 11 (100 to 125 embryos/sample), and crosslinking was performed in 1.85% formaldehyde solution (Sigma-Aldrich, St. Louis, MO, USA). RIPA buffer containing proteinase inhibitor cocktail (Thermo Fisher, Waltham, MA, USA) was added to fixed embryos, followed by homogenization and sonication for 90 s with 2 short intervals every 30 s to produce 200 to 300 base pair long fragments (Omni Sonic Ruptor 400). The anti-Flag and anti-HA polyclonal antibody (SC-805, Santa Cruz Biotechnology, Dallas, Texas, USA) or normal mouse IgG (SC-2025, Santa Cruz Biotechnology, Dallas, Texas, USA) were used to immunoprecipitate chromatin. The precipitated chromatin was then heated overnight at 65 °C to reverse the crosslinks, and the DNA was purified for further use. The ChIP-PCR was then performed with immunoprecipitated chromatin using region-specific primers (shown in Figure 5A). The primers used are listed in Table 5.
+ Open protocol
+ Expand
2

Crude Oil Emulsion Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Unrefined crude light oil from Saudi Arabia was used without any pretreatment. Certain amounts of crude oil, water and LGO:Cr nanoparticles were mixed to form homogeneous emulsions via an ultrasonic homogenizer (Omni Sonic Ruptor 400). The oil content in the emulsions varied at 35 wt.%, 50 wt.% and 65 wt.%. The emulsions were placed in 3.5 mL, 10 mm path-length UV-grade quartz cuvettes for measurements.
+ Open protocol
+ Expand
3

Nanocellulose Aerogel Fabrication

Check if the same lab product or an alternative is used in the 5 most similar protocols
A 2%wt aqueous suspension of CNC/CNF mixture was prepared with a mass ratio of 1:1, 1:2, 1:3, 2:1, and 3:1 using Ultrasonication (Sonic Ruptor 400, Omni Inc., Kennesaw, GA, USA). The mixtures were frozen at −20 ± 1 °C for 18 h. The frozen samples were freeze-dried (FreeZone, Labconco, Kansas city, MO, USA) at a temperature of −50 ± 2 °C under a vacuum of 0.1–0.05 mbar for 48 h to produce aerogel, named A-C/Fxx, where x denotes a ratio of nanocellulose. For example, A-C/F13 was aerogel from a mixture of CNC and CNF with a ratio of 1:3.
+ Open protocol
+ Expand
4

Cellular Uptake of Glycyrrhetinic Acid

Check if the same lab product or an alternative is used in the 5 most similar protocols
EJ and SV-HUC-1 cells, at a concentration of 1×106 cells per well, were seeded in six well plates and were incubated overnight. After exposure to different concentrations of GA or GA-TAT for 2 h, the cells were washed three times with PBS. Then, the cells were scraped from the wells, transferred to sterile Eppendorf tubes, and sonicated using a probe sonicator (OMNI Sonic Ruptor 400, Kennesaw, GA, USA). The cell solutions were centrifuged for 15 min at 8,000×g, and the supernatant was removed and tested via HPLC. To further test the effect of incubation time on cellular uptake, cells were treated with 2.5 μM GA or GA-TAT conjugates for different durations, followed by the other experimental procedures as described earlier.
+ Open protocol
+ Expand
5

Photocatalytic Degradation of Methylene Blue

Check if the same lab product or an alternative is used in the 5 most similar protocols
The photocatalytic
activity of the prepared nanocomposites was evaluated by utilizing
MB dye as a pollutant model. The photocatalyst (50 mg) was dispersed
in 100 mL of methylene blue (3.13 × 10–5 M,
and the initial pH value of the solution was nearly 6.5). Then, the
mixture of the catalyst/MB was sonicated for 2 min using an OMNI SONIC
RUPTOR 400 ultrasonicator, followed by stirring for 1 h in the dark
to reach adsorption–desorption equilibrium. Then, sunlight
using a PECCEL PEC-l01 portable solar simulator illuminated the solution.
The solar simulator is equipment irradiating light very similar to
sunlight. The wavelength interval was 300–1400 nm. Samples
were taken at different time intervals to analyze the concentration
variation of the MB dye. The filtered sample was analyzed by monitoring
the maximum absorption peak at 664 nm (λmax for MB)
using a UV-2500PC Shimadzu UV–vis spectrophotometer. The photodegradation
efficiencies were calculated based on the UV–vis absorption
of the MB dye at different irradiation times.
+ Open protocol
+ Expand
6

Preparation of Transgenic Mouse Brain Homogenates

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hemi-sected transgenic mouse brains were stored at −80 °C prior to homogenization. Frozen brains were placed onto a chilled metal block on dry ice and were transected coronally at the level of the midbrain to separate caudal and rostral brain sections (see also Fig. 15). Sections were placed in 1 mL PBS prepared with protease inhibitor tablet (Roche) and were sonicated using a probe sonicator (Omni Sonic Ruptor 400) at 30% pulse/30% power, 20 times, 10-s cycles. The resulting homogenates were centrifuged at 10,000 xg for 15 min at 4 °C. and supernatants used for subsequent steps [27 (link)]. Clone 1, Clone 9, and Clone 10 lysates were prepared as described previously [27 (link)]. Cell pellets were lysed in 0.1% Triton-X/PBS solution plus protease inhibitor cocktail (“Complete”, Roche) and were clarified with sequential five-minute 500 xg and 1000 xg spins. Protein concentrations in brain homogenates and cell lysates were measured by Bradford assay (Bio-Rad) and were normalized to 5 μg/μL and stored at −80 °C until use.
+ Open protocol
+ Expand
7

Quantifying Enzymatic Activity in Endothelial Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
HUVECs and HMVEC-dLyAd cells were subcultivated using trypsin, then centrifuged and counted. To obtain a homogenate containing an equivalent cell number, cells were centrifuged again and re-suspended in an appropriate volume of cold RIPA buffer containing a protease inhibitor cocktail. Cells were disrupted using a probe sonicator on ice (Sonic Ruptor 400, OMNI International). Insoluble cellular components were removed by centrifugation at 15,000 RPM for 10 min at 4 °C. The protein content of the supernatant was determined according to the Bradford protein assay using BSA as the standard [33 (link)]. The enzymatic activity was tested on 5 μg of protein using L-Met-AMC (Santa Cruz Biotechnology) as a substrate. The reaction was performed in an assay buffer (pH 7.5) containing 50 mM HEPES, 0.1 mM CoCl2, 100 mM NaCl and 1 mg/mL PEG 6000, in a final volume of 100 μL. Fluorescence was measured every 20 sec for 1 h at 25 °C using a plate reader (Synergy HT Multi-Mode Microplate Reader, BioTek), n = 2.
+ Open protocol
+ Expand
8

Quantifying Photosynthetic Pigments and Cyanotoxins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Each lyophilized plant and cyanobacterial sample was mixed with 4 mL of 80% acetone and homogenized on an Omni Sonic Ruptor 400 homogenizer (USA) on ice (3/8” processing tip, gradually increasing the power up to 400 watts, 10 s homogenization). Verification of complete cell lysis was performed microscopically. After the samples were centrifuged for 5 min at 10,000× g, 200 µL of the supernatant was transferred to a 96-well plate, and the absorbance at 470, 646, and 665 nm wavelengths was measured on a BioTek Synergy H1 microplate reader. Photosynthetic pigments content was calculated using the equations developed by Wellburn [24 (link)]. A total of 1 mL of sample was collected for the analysis of cyanotoxins concentration.
+ Open protocol
+ Expand
9

Encapsulation of DPP Extract in NaCas-Lecithin

Check if the same lab product or an alternative is used in the 5 most similar protocols
One hundred grams of DPP grains were extracted using ethanol 80% for 24h then homogenized using ‎‎300VT Ultrasonic Homogenizer (BioLogics, Inc. Manassas, VG, USA) at ‎temperature below 25°C [19 (link)]. The extracts were filtered and concentrated using rotary evaporator at 45°C. The extract was evaporated under reduced pressure, ‎lyophilized to give a yellow semisolid residue (free extract) (25g) and stored in dark container at 4°C ‎until use.
For encapsulation, Sodium caseinate (NaCas) was hydrated to 5% w/v in deionized water overnight at room temperature (21°C). Soy lecithin 0.5% w/v dissolved in (10 mM sodium phosphate, pH 7). lecithin was mixed with the NaCas solution in ratio 1:1 by gentle magnetic stirring for 1 h. DPP extract was then added to the wall material 10%, and the nanocapsules solution was formed using an Ultra-Turrax homogenizer T18 basic (IKA, Wilmington, USA), operating at a speed of 18,000 rpm for 5 min, ultrasonicated at 160 W power, 20 kHz frequency and with 50% pulse (Sonic Ruptor 400, OMNI International the Homogenizer).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!