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40 protocols using eight channel sense head coil

1

Functional MRI Imaging Protocol

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Imaging data were collected on a Philips Achieva 3 Tesla MR-scanner, equipped with an eight-channel Philips SENSE head coil (Philips Medical Systems, Best, Netherlands) at the Intervention Centre, Oslo University Hospital, Norway. Functional data were collected using a BOLD-sensitive T2*-weighted echo-planar imaging sequence (36 slices, no gap; repetition time (TR), 2,2 s; echo time (TE), 30 ms; flip angle, 80°; voxel size, 3 × 3 × 3; field of view (FOV), 240 × 240 mm; interleaved acquisition). Anatomical T1-weighted images consisting of 180 sagittal-oriented slices were obtained using a turbo field echo pulse sequence (TR, 6.7 ms; TE, 3.1 ms; flip angle 8°; voxel size 1 × 1.2 × 1.2 mm; FOV, 256 × 256 mm).
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2

Three Tesla MRI Functional Brain Imaging

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Scanning was performed on two scanners; a three Tesla Philips Achieva whole body MR scanner equipped with an eight-channel Philips SENSE head coil (Philips Medical Systems, Best, the Netherlands).
The functional data were acquired with a blood oxygen level dependent (BOLD) sensitive T2* echo-planar imaging sequence (TR 2.208 s, TE 30 ms, FOV 240 × 240 × 126, flip angle 80°, serial acquisition, SENSE 2.3) with 42 slices and a voxel size of 3 mm × 3 mm × 3 mm, and reconstructed into a 80 × 80 × 42 matrix. One session consisted of 335 volumes, and lasted 12 min and 40 s. The first five volumes were discarded to allow for MR signal equilibrium. For offline registration of the functional data, an anatomical T1 weighted image was acquired (TR 4.5 ms, TE 2.2 ms; FOV 256 × 256 × 204, flip angle 8°, SENSE 1.2) with voxel size 1 × 1 × 1.2 and 170 slices.
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3

Motor Execution and Imagery fMRI Protocol

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Functional images were acquired with a 3T Achieva scanner (Philips Medical Systems, the Netherlands) using an eight-channel SENSE head coil and a single-shot T2-weighted echoplanar imaging (EPI) sequence (TR = 2000 ms, TE = 30 ms, matrix 64 × 64, FOV 240 mm × 240 mm × 110 mm, flip angle = 90°, voxel size 3.75 mm × 3.75 mm, slice thickness = 5 mm, no gap, 22 slices). One hundred volumes were acquired in the motor execution run and 200 volumes in each imagery run. Before each run, five dummy volumes were collected for T1 equilibration purposes. A SENSE factor of 2 and “dynamic stabilization” were additionally employed (Foerster et al., 2005 (link)). Reference anatomical images were acquired using a T1-weighted three-dimensional magnetization-prepared, rapidly acquired gradient echo (MP-RAGE) sequence (TR/TE = 7.2/3.4 s, matrix/FOV 240/240 mm, flip angle = 8°, 1 mm isotropic voxel size, 170 sagittal slices). Head motion was restricted with foam padding and straps over the forehead and under the chin. The total MRI acquisition lasted about 34 min.
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4

Automated Segmentation of Amygdala Nuclei

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Whole-brain T1-weighted anatomic images were obtained using a Philips 3T Achieva scanner equipped with an eight-channel SENSE-Head coil and using a 3D FFE T1-weighted structural sequence applied in the sagittal plane with 190 1-mm thick slices (TR/TE = 7.6/3.5 ms; acquisition matrix = 256 × 250; the field of view = 256 mm; flip angle = 8°; total acquisition time = 7:23 min). Images were visually inspected for significant motion artifact by trained raters (DJL, WS).
Amygdala nuclei were measured by quantitative morphometric analysis of T1-weighted MRI data using an automated segmentation protocol from FreeSurfer v6.01 with a procedure that uses Bayesian inference with a probabilistic atlas derived from manual delineations of the amygdala using ultra-high-resolution ex vivo MRI scans (Saygin et al., 2017 (link)). Bilateral whole amygdala and hippocampal volumes were measured using an automated protocol from FreeSurfer v6.0. The automated segmentation of amygdala nuclei has been validated for standard resolution T1 data of varying MR contrast. The approach takes individual underlying anatomy into account, thus providing greater spatial sensitivity (Saygin et al., 2017 (link)). Segmentations were visually inspected for failures and manually corrected where necessary. All neuroimaging was completed within 1 year of social network data collection.
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5

Functional MRI Acquisition and Task Protocol

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fMRI data were acquired using a 3.0 Tesla Philips Achieva MRI scanner with an eight-channel SENSE head coil. Whole-brain functional images were acquired using axial oblique slices (tilted 15° anterior higher than posterior relative to the AC-PC line) with an isotropic 2.5-mm3 voxel size (TR = 2 s, TE = 25 ms, flip angle = 90°, acquisition matrix = 96 × 96, no gap). The first two volumes of each functional run were discarded for equilibration. High-resolution anatomical images were acquired in the sagittal plane using a T1-weighted volumetric 3D SPGR sequence (TR = 7.9 ms, TE = 3.7 ms, flip angle = 7°, acquisition matrix: 256 × 256, 1-mm3 isotropic resolution). Foam cushioning between participants’ head and the birdcage coil was used to minimize motion. During the structural, scout, and reference scans, participants watched a preferred video, with the restriction that it could not be related to the topic presented in their own interest condition. During the functional scan, participants were instructed simply to pay attention to each picture. They were informed prior to scanning that they would be tested after the scan regarding how many pictures they remembered.
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6

Multimodal MRI Acquisition Protocol

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Magnetic resonance imaging data were acquired on a Philips Achieva 3T scanner equipped with an eight-channel SENSE head coil, including the following scans: (a) sagittal three-dimensional T1-weighted scan (TR = 8.1 ms, TE = 3.7 ms, flip angle = 6°, acquisition matrix = 256 × 256 × 160, field of view = 256 mm × 256 mm × 160 mm, voxel size = 1 mm × 1 mm × 1 mm, and SENSE factor of 2 along the left–right direction); (b) sagittal three-dimensional FLAIR (TR = 8000 ms, TI = 2400 ms, TE = 337 ms, flip angle = 6°, acquisition matrix = 256 × 256 × 160, field of view = 256 mm × 256 mm × 160 mm, voxel size = 1 mm × 1 mm × 1 mm, and SENSE factor of 2 along the left–right direction and 2.5 along the anterior–posterior direction); and (c) multi-echo SWI using an axial 3D gradient echo scan (TR = 36 ms, TE = 6/12/18/24/30 ms, flip angle = 17°, acquisition matrix = 440 × 222 × 64, field of view = 220 mm × 166 mm × 128 mm, acquired voxel size = 0.5 mm × 0.5 mm × 2 mm, reconstructed voxel size = 0.5 mm × 0.5 mm × 1 mm, and SENSE factor of 1.2 along the left–right direction) (8 (link)).
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7

Functional MRI Acquisition Protocol for Brain Imaging

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The experiment was conducted on a 3 Tesla scanner (Philips Achieva), equipped with an eight-channel SENSE-head coil. Stimuli were projected on a screen behind the scanner, which participants viewed via a mirror mounted on the head-coil. T2*-weighted functional images were acquired using a gradient-echo echo-planar imaging sequence. An acquisition time of 2000 ms was used (image resolution: 3.03 × 3.03 × 4 mm3, TE = 30, flip angle = 90°). After the functional runs were completed, a high-resolution T1-weighted structural image was acquired for each participant (voxel size = 1 × 1 × 1 mm3, TE = 3.8 ms, flip angle = 8°, FoV = 288 × 232 × 175 mm3). Four dummy scans (4 ×2000 ms) were routinely acquired at the start of each functional run and were excluded from analysis.
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8

Multimodal Neuroimaging Protocol for Brain Imaging

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Functional MR images were acquired at the Sir Peter Mansfield Imaging Centre, University of Nottingham, using a Philips Achieva 3.0-Tesla scanner equipped with an eight-channel SENSE head coil. Structural images were acquired using 3D MPRAGE sequence (1 mm3 isotropic resolution, repetition time (TR)/echo time (TE) = 8.278/2.3 ms, flip angle = 8°, 160 slices, FOV = 256 mm × 256 mm). For functional images, echo-planar imaging (EPI) sequence (TR/TE = 2,000/35 ms, flip angle 90°, 32 slices, FOV = 240 mm × 240 mm, voxel size = 3 mm × 3 mm × 3 mm) was used for the task and resting conditions.
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9

3T fMRI Acquisition Protocol

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Functional images were collected with a 3T Achieva scanner (Philips Medical Systems, the Netherlands) using an eight-channel SENSE head coil. Head motion was restricted with foam pads and straps over the forehead and under the chin. Functional imaging was performed with T2* blood‑oxygenation-level-dependent contrast (BOLD) echoplanar imaging (TR/TE = 2000/22 ms); 37 transversal slices were acquired aligned with the anterior-posterior commissure line, positioning the most inferior slice such that temporal lobe was completely covered; slice thickness = 3 mm (no gap); Matrix = 80 × 80, FOV = 240 × 240 mm, flip angle = 90 degrees. High-resolution anatomical images were acquired with a 3D turbo field echo T1-weighted sequence (TR/TE = 7.1/3.4 ms, matrix 240 × 240, FOV 240 mm, slice thickness 1 mm, 170 slices). Per run 345 functional volumes were acquired (excluding the first 5 dummy volumes).
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10

High-Resolution 3D T1-Weighted MRI Acquisition

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Adults participated in a magnetic resonance imaging (MRI) scan in a Philips Achieva 3-Tesla scanner (Philips Medical Systems, Inc., Best, Netherlands) using an eight-channel SENSE head coil, housed in the Vanderbilt University Institute of Imaging Science (Nashville, TN, USA). High-resolution three-dimensional anatomical T1-weighted MRI images were acquired using a turbo field echo sequence with full brain coverage and the following parameters: field of view = 256 × 256 mm2; in plane voxel resolution = 1 × 1 mm2; repetition time = 8.9 ms; echo time = 4.6 ms; flip angle = 8°; slice thickness = 1 mm and 170 slices with no slice gap.
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