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8 protocols using ibrutinib pci 32765

1

Flow Cytometry and Immunoblotting Analysis

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The following antibodies were used for flow cytometry analysis: anti-Apo2.7-PE, anti-CD5-FITC, anti-CD19-APC and control IgG1-FITC mAbs were purchased from BD Biosciences (Le Pont de Claix, France). Analysis of protein expression was conducted by immunoblotting using the following primary antibodies: anti-Bcl-2, anti-IκBα and anti-phosho-IκBα (Cell Signaling, Saint Quentin en Yvelines, France), Anti-Mcl-1 (S19) (Santa Cruz Biotechnology, Santa Cruz, CA), anti-Bcl-xL (BD Biosciences, Le Pont de Claix, France), Anti-NF-κB p52 Antibody and anti-actin (Merck Millipore, Lyon, France). ABT-199 was kindly provided by Abbvie Laboratories (North Chicago, IL, USA) and the selective BTK inhibitor ibrutinib (PCI-32765) was obtained from Selleck Chemicals (Souffelweyersheim, France).
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2

Ibrutinib and Nutlin-3 Combination Therapy

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For in vitro treatments with Ibrutinib (PCI-32765) (Selleckchem, Houston, TX), used either alone or in combination with Nutlin-3 (Cayman Chemicals, Ann Arbor, MI), cells were seeded at a density of 1x106 cells/mL. In selected experiments, Ibrutinib was assessed also in combination with the RG7112 MDM2 inhibitor (Selleckchem). At different time points after treatment, cell viability was examined by Trypan blue dye exclusion and MTT (3-(4, 5-dimethilthiazol-2yl)-2, 5-diphenyl tetrazolium bromide) colorimetric assay (Roche Diagnostics Corporation, Indianapolis, IN) for data confirmation, as previously described [41 (link), 42 (link)]. In order to investigate the concentration required to induce death in 50% of cells respect to control, IC50 values were calculated from dose-response curves constructed by plotting cell survival (%) versus drug concentration. The cell cycle profile was analyzed by 5-bromodeoxyuridine (BrdU) incorporation assessed by flow cytometry, as previously described [43 (link)]. Levels of apoptosis were quantified by Annexin V-FITC/propidium iodide (PI) staining (Immunotech). To avoid non-specific fluorescence from dead cells, live cells were gated tightly using forward and side scatter, as described [44 (link)].
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3

Immunophenotyping and functional assays for human B cells

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The FcγRIIB-specific mAb AT10 (biotinylated, FITC- and PE-conjugated) was obtained from Abcam (Cambridge, MA, USA) [15 (link)]. Goat IgG and rabbit anti-goat IgG were used to make ICs as previously described [11 (link)]. Mouse IgG1, rabbit peroxidase-anti-peroxidase (PAP) ICs were purchased from Jackson ImmunoResearch Laboratories (West Grove, PA, USA). CpG 2006 was purchased from Santa Cruz Biotechnology (Dallas, TX, USA). Mouse isotype control mAbs and mAbs specific for CD19 (SJ25C1), CD45 (HI30), CD27 (L128), CD38 (HB7) and CD14 (M5E2) were purchased from BD Biosciences (San Jose, CA, USA). Recombinant human IL-21, IL-2 and IL-10 and human sCD40L were purchased from PeproTech (Rocky Hill, NJ, USA). Antibodies specific for CD27 (O324), CD19 (HIB19) and CD20 (2H7) were purchased from eBioscience (San Diego, CA, USA). Human B cell isolation kit was obtained from BD Biosciences. Staphylococcus aureus Cowan (SAC) and lectin from Phytolacca Americana (Pokeweed mitogen, PWM) were obtained from Merck Millipore (Billerica, MA, USA) and Sigma-Aldrich (St. Louis, MO, USA), respectively. Carboxyfluorescein succinimidyl ester (CFSE) was acquired from eBioscience (San Diego, CA, USA). SB203580, SP600125, Z-VAD-FMK, LFM-A13 and ibrutinib (PCI-32765) were all purchased from Selleck Chemicals (Houston, TX, USA).
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4

Combinatorial Tumor Therapy Evaluation

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The bilateral subcutaneous model was established as for the in vivo anti-cancer efficacy. When the primary tumors reached 100–150 mm3 in volume, mice were injected intratumorally with nMOFs at a dose of 0.11 mg/mouse or PBS. Anti-CD4 (GK1.5, BioXCell, USA), anti-CD8 (OKT-8, BioXCell, USA), mouse IgG (C1.18.4, BioXCell, USA) antibodies Or B cell inhibitor ibrutinib (PCI-32765, Selleckchem) were intraperitoneally injected into the mice (200 μg/mouse) on Day 0 and 5 after the first treatment. Twelve hours post-injection, mice were anesthetized with 2% (v/v) isoflurane, and tumors were irradiated with X-ray at 225 kVp and 13 mA with a 0.3-mm Cu filter. To evaluate the therapeutic efficacy, the tumor growth and body weight were monitored daily.
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5

Characterization of MCL Cell Lines

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MCL-RL cells were derived from an MCL patient at the University of Pennsylvania. JeKo-1 and Rec-1 cells were purchased from the American Type Culture Collection (ATCC). SP49 cells were obtained from Dr. Raymond Lai, University of Alberta. Granta-519 cells were purchased from the Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (Braunschweig, Germany). The cell line identity was confirmed by diverse methods including flow cytometry, FISH, and short-tandem repeat (STR) studies. Flow cytometry six-color panel consisted of antibodies against CD45, CD20, CD5, CD23, and immunoglobulin kappa and lambda light chain. FISH detected fusion of immunoglobulin heavy chain (IgH) and cyclin D1 genes. STR test was done at University of Pennsylvania core facility. The cell lines were also found free of mycoplasma contamination using Mycoplasma detection kits from Thermo Fisher (Waltham, MA). All cells were grown in RPMI medium supplemented with 10% fetal bovine serum and 100 μg/ml penicillin/streptomycin under a humidified 37°C/5% CO2 incubator condition. Ibrutinib (PCI-32765) and CB-839 were purchased from Selleckchem (Houston, TX). [1,6-13C2] glucose, [1,2-13C2] glucose and [U-13C5, U-15N2] glutamine were acquired from Cambridge Isotope and Sigma Aldrich.
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6

Investigating BTK Pathway Inhibition

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Antibodies were purchased from the indicated suppliers: glyceraldehyde3-phosphate dehydrogenase (GAPDH; clone D-6; Santa Cruz Biotechnology, Santa Cruz, CA, USA). phosphorylated-CYLD (p-CYLD) (Ser418; #4500), CYLD (D1A10; #8462), phosphorylated-BTK (p-BTK) (Tyr223; #5082), BTK (D3H5; #8547), cleaved caspase-3 (Asp175; #9661), and β-actin (8H10D10; #3700) (all Cell Signaling Technology, Danvers, MA, USA). Ibrutinib (PCI-32765) and acalabrutinib (ACP-196) (Selleck Chemicals, Houston, TX, USA). CD20 monoclonal antibody (rituximab) (Novartis, Basel, Switzerland). DMSO (as control) (Selleck Chemicals, Houston, TX, USA).
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7

Murine Model of Inflammation

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C57BL/6 mice were obtained from Harlan (Indianapolis, IN) and Jackson Laboratory (Harbor, ME). Il10–/– mice were obtained from Jackson Laboratory. LPS and anti–β-actin antibody were obtained from Sigma-Aldrich (St. Louis, MO). The polyclonal goat anti-IgM F(ab′)2 was obtained from ICN/MP Biomedicals (Irvine, CA) or Jackson ImmunoResearch Labs (West Grove, PA). The anti–IL-10R (Clone 1B1.3a) was obtained from BD Biosciences (San Diego, CA). Anti-CD40 (1C10 clone) was a gift from Dr. Maureen Howard and was used as ascites fluid. Syk Inhibitor IV (BAY 61-3606) and SB-203580 were obtained from Calbiochem (San Diego, CA). Ibrutinib (PCI-32765) was obtained from Selleckchem (Houston, TX). Dasatinib was obtained from Bristol-Myers Squibb Company (New York City, NY). Anti–p-Syk, anti-Syk, anti–p-p38 MAPK, anti-p38/MAPK, anti–p-p44/42 MAPK, anti–p-Akt, and anti-Akt antibodies were obtained from Cell Signaling (Danvers, MA). Anti-ERK1 was obtained from Santa Cruz Biotechnology (Santa Cruz, CA).
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8

Murine Antibodies for Lymphocyte Profiling

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Murine monoclonal antibody against CCR7 and CCRL2 and PE-labelled antibodies against CXCR5 and CXCR3 were purchased from R&D Systems. PE-labelled antibodies against CXCR4, PE and FITC-labelled antibodies against CD19, and FITC and PE-labelled antibodies against IgD were purchased from BD. PE-labelled antibodies against IgM were purchased from Biolegend and Beckman Coulter. PE-labelled rabbit α-mouse IgG was obtained from Dako Cytomation. Goat F(ab’)2 anti-human IgM (α-IgM) and IgD (α-IgD) for stimulations and F(ab’)2 of irrelevant specificity as a control were purchased from Southern Biotech. Chemokines were purchased from Peprotech and R&D. Ibrutinib (PCI-32765) was bought from Selleckchem, Bafetinib (INNO 406) from Adooq, and R406 from Riegel Pharmaceuticals. Annexin V-FITC and 7-aminoactinomycin D (7AAD) for determination of cell viability were from Beckman Coulter.
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